CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0700400-00	Rice	cytosol, plasma membrane	13.85	50.0
KRH44097	Soybean	cytosol, endoplasmic reticulum	92.97	48.73
KRH44095	Soybean	endoplasmic reticulum	86.59	45.5
KRH47064	Soybean	endoplasmic reticulum	50.11	40.0
KRH23269	Soybean	endoplasmic reticulum	72.09	39.9
KRH10050	Soybean	endoplasmic reticulum	74.07	39.32
KRG88464	Soybean	cytosol	39.12	39.04
KRH10051	Soybean	endoplasmic reticulum, nucleus	72.97	38.78
KRH23268	Soybean	endoplasmic reticulum	69.67	37.16
KRH62403	Soybean	cytosol, endoplasmic reticulum	18.46	37.0
KRH10053	Soybean	endoplasmic reticulum	69.23	36.93
KRH16725	Soybean	cytosol	18.46	36.36
KRH44094	Soybean	endoplasmic reticulum	68.79	36.1
KRH47522	Soybean	endoplasmic reticulum, nucleus	68.57	36.07
KRH44093	Soybean	endoplasmic reticulum	66.37	35.7
KRH23265	Soybean	endoplasmic reticulum, nucleus	67.91	35.68
KRH44090	Soybean	endoplasmic reticulum	66.81	35.35
KRH47066	Soybean	endoplasmic reticulum, nucleus	65.93	34.92
KRH23266	Soybean	cytosol	63.08	34.75
KRH47525	Soybean	endoplasmic reticulum	66.15	34.68
KRH62399	Soybean	cytosol, endoplasmic reticulum	17.8	34.32
KRH47067	Soybean	endoplasmic reticulum	65.05	34.26
TraesCS6D01G121900.1	Wheat	mitochondrion	33.41	34.0
KRH13357	Soybean	endoplasmic reticulum	18.02	33.88
KRH68548	Soybean	cytosol	60.0	31.82
KRH44092	Soybean	nucleus	55.82	29.64
KRH33939	Soybean	cytosol, endoplasmic reticulum	56.26	29.6
KRH57987	Soybean	cytosol	16.26	28.68
GSMUA_AchrUn_...	Banana	cytosol	53.85	28.66
GSMUA_Achr1P24370_001	Banana	cytosol	53.19	28.57
KRH30640	Soybean	cytosol	11.65	28.34
KRG91271	Soybean	cytosol	52.97	28.09
TraesCS5A01G378800.2	Wheat	cytosol	47.91	28.02
TraesCS4D01G035200.1	Wheat	cytosol	50.99	27.99
GSMUA_Achr1P22970_001	Banana	cytosol	51.87	27.9
TraesCS6B01G395700.1	Wheat	cytosol	49.01	27.46
GSMUA_AchrUn_...	Banana	cytosol	47.25	27.42
Zm00001d033623_P003	Maize	cytosol	52.09	27.34
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	52.53	27.25
TraesCS5A01G378700.1	Wheat	cytosol	51.65	27.2
EER93612	Sorghum	cytosol	51.65	27.14
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	51.21	27.06
TraesCS4B01G037700.3	Wheat	cytosol, golgi	50.99	26.95
Os03t0699700-01	Rice	cytosol, plastid	50.99	26.88
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	50.99	26.85
TraesCS5B01G382300.1	Wheat	cytosol, unclear	50.99	26.85
EES04025	Sorghum	cytosol	51.21	26.84
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	50.77	26.74
GSMUA_Achr6P25090_001	Banana	cytosol	49.23	26.73
Os03t0738600-01	Rice	plasma membrane, plastid	50.99	26.67
TraesCS5B01G382400.1	Wheat	cytosol, golgi	50.11	26.64
TraesCS5B01G382600.1	Wheat	cytosol	50.11	26.48
EES04028	Sorghum	cytosol	50.55	26.35
GSMUA_Achr6P25110_001	Banana	cytosol	45.93	26.32
HORVU5Hr1G093770.1	Barley	cytosol	49.67	26.19
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	50.77	26.04
Zm00001d042540_P008	Maize	cytosol	50.99	26.01
EER93611	Sorghum	cytosol	50.55	25.9
TraesCS5A01G378900.1	Wheat	cytosol	49.01	25.81
TraesCS4A01G275900.1	Wheat	cytosol, unclear	49.45	25.63
TraesCS4B01G037800.1	Wheat	cytosol	49.45	25.63
GSMUA_Achr9P19250_001	Banana	plasma membrane	53.41	25.55
KXG37783	Sorghum	cytosol	50.11	25.53
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	49.23	25.51
TraesCS4D01G035100.1	Wheat	cytosol	49.23	25.51
Zm00001d042541_P002	Maize	cytosol	49.45	25.45
HORVU5Hr1G117110.1	Barley	cytosol	49.45	25.37
TraesCS6B01G160400.1	Wheat	mitochondrion	48.57	25.32
TraesCS6A01G132200.1	Wheat	mitochondrion	48.35	25.2
TraesCS6A01G132500.1	Wheat	mitochondrion	48.35	25.2
TraesCS5D01G388800.1	Wheat	cytosol	49.67	25.2
Zm00001d033624_P001	Maize	cytosol	49.01	25.14
GSMUA_Achr6P25080_001	Banana	cytosol	42.64	25.03
TraesCS5D01G513100.1	Wheat	cytosol	47.69	25.0
Os11t0575600-01	Rice	mitochondrion	47.47	24.88
TraesCS3B01G605700.1	Wheat	cytosol	47.91	24.63
TraesCS3B01G602500.1	Wheat	cytosol	47.69	24.63
KRG89883	Soybean	cytosol, plastid	42.2	22.35
TraesCS6D01G122000.1	Wheat	cytosol	15.16	22.26
KRG89889	Soybean	cytosol, plastid	41.98	22.21
KRG89888	Soybean	nucleus	43.08	21.71
KRH07345	Soybean	cytosol, plastid	40.66	21.49
KRH66214	Soybean	cytosol	40.88	21.48
KRH17965	Soybean	plastid	42.86	21.24
KRH69027	Soybean	plastid	41.98	21.2
KRH42646	Soybean	plastid	42.86	21.17
TraesCS5A01G379000.1	Wheat	nucleus, unclear	35.82	21.17
KRH06197	Soybean	nucleus	42.86	21.15
KRH18682	Soybean	cytosol, mitochondrion	42.2	21.08
KRH47615	Soybean	nucleus	42.64	20.93
KRG97300	Soybean	plastid	41.32	20.91
KRH29669	Soybean	plastid	41.1	20.75
KRH29668	Soybean	nucleus	41.32	20.75
KRH24671	Soybean	cytosol, plastid	41.54	20.68
TraesCS4A01G359800.1	Wheat	cytosol	23.96	20.53
TraesCS4A01G275800.1	Wheat	cytosol	10.77	20.5
KRH50048	Soybean	cytosol	37.8	18.9
KRH21441	Soybean	cytosol	36.48	18.24
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	17.8	16.6
KRH35534	Soybean	cytosol	15.82	16.07
KRH10882	Soybean	cytosol	9.67	10.14
GSMUA_Achr6P25100_001	Banana	cytosol	41.98	1.59

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	UniProt:A0A0R0IXL0
EMBL:ACUP02004134	EnsemblPlantsGene:GLYMA_07G007100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH47069	ProteinID:KRH47069
ProteinID:KRH47069.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF48	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0006EE01FF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:529398..533680

Molecular Weight (calculated)

51493.9 Da

IEP (calculated)

7.118

GRAVY (calculated)

-0.508

Length

455 amino acids

Sequence
(BLAST)

001: MHCSHNDARI LDDLRSAGIG KGKVGKQTFL EGLVTSLPTL GAGQSAFNVH FEWDSDMGIP GAFYIENFKQ VEFFLVSLTL EDIPNHGSIH FLCNSWVYNS
101: KKYKSGRIFF ANKTYLPSEK PGPLVKYREE ELKTLRGDGT GERKEHERIY DYDVYNDLGD PDSNARLARP VLGGSTTLPY PRRGRTGRKK SRKDESFGHL
201: KSSDFLVYIL KSASQNVIPQ LQSALSLQFN QPEFNSFYDV RGLDDGGIKL PTNTLSQLSP IPLFKELFRT DGEQALKFPT PKVIQVEQSA WMTDEEFARE
301: MTAGVNPHII KRLQSKLDSQ LYGDNTSTIT KQHLEPNLGG LTVEQDYPYA ADGLEIWAAI KSWVQEYVSF YYKSDAAVAQ DAELQAFWKE LVEVGHGDKK
401: NEPWRGKMKT RQELIDSCTI LIWTASALHA AVNFGQYPYG GYILNRPTLS RRFMP

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.