CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89889	Soybean	cytosol, plastid	72.11	76.98
KRG89883	Soybean	cytosol, plastid	70.59	75.44
KRG89888	Soybean	nucleus	72.98	74.2
KRH18682	Soybean	cytosol, mitochondrion	71.35	71.9
Solyc01g009680.2.1	Tomato	plastid	33.88	70.2
Os12t0559934-00	Rice	cytosol	14.38	67.69
HORVU3Hr1G047210.1	Barley	cytosol	15.47	65.44
CDY72550	Canola	cytosol	22.55	64.49
VIT_06s0004g01500.t01	Wine grape	cytosol	55.23	64.1
CDY61034	Canola	cytosol	31.05	63.76
VIT_06s0004g01480.t01	Wine grape	cytosol	55.01	63.68
PGSC0003DMT400020118	Potato	cytosol	48.04	63.64
CDY07409	Canola	cytosol	26.14	62.02
CDY70843	Canola	cytosol	8.28	60.32
KRH29669	Soybean	plastid	58.93	60.04
VIT_06s0004g01510.t01	Wine grape	plastid	58.93	60.04
KRH29668	Soybean	nucleus	59.26	60.04
VIT_06s0004g01470.t01	Wine grape	cytosol	58.82	59.8
VIT_06s0004g01460.t01	Wine grape	plastid	38.45	59.03
KRH24671	Soybean	cytosol, plastid	58.71	58.97
Solyc01g006560.2.1	Tomato	plastid	57.3	58.31
PGSC0003DMT400081909	Potato	plastid	56.32	57.51
Solyc01g006540.2.1	Tomato	plastid	55.99	57.37
CDY61881	Canola	cytosol	21.9	56.62
Solyc12g011040.1.1	Tomato	nucleus, plastid	54.79	56.39
GSMUA_Achr9P12470_001	Banana	plastid	51.63	56.23
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	51.85	55.41
OQU80925	Sorghum	cytosol	52.07	55.26
GSMUA_Achr3P11780_001	Banana	plastid	50.33	54.61
CDX91565	Canola	plastid	51.74	52.78
Zm00001d053675_P001	Maize	plastid	51.85	52.6
HORVU7Hr1G050680.1	Barley	peroxisome	39.11	52.49
AT3G45140.1	Thale cress	plastid	51.2	52.46
HORVU6Hr1G033600.1	Barley	plastid	50.98	52.23
CDX79416	Canola	plastid	51.31	52.1
TraesCS7D01G029400.1	Wheat	cytosol	15.03	52.08
Os08t0508800-01	Rice	nucleus, plasma membrane	52.4	52.06
CDX67920	Canola	plastid	51.09	51.88
TraesCS6B01G193400.1	Wheat	plastid	50.87	51.83
Bra003526.1-P	Field mustard	plastid	50.98	51.77
TraesCS4D01G347300.1	Wheat	cytosol	49.89	51.75
TraesCS6A01G166000.1	Wheat	golgi	50.76	51.72
Bra022535.1-P	Field mustard	plastid	45.64	51.66
TraesCS6D01G154600.1	Wheat	plastid	50.65	51.61
CDY16339	Canola	plastid	42.59	51.38
KXG29701	Sorghum	plastid	51.31	51.36
CDY04196	Canola	plastid	49.67	51.29
TraesCS7D01G244800.1	Wheat	plastid	52.07	51.29
Os08t0509100-01	Rice	nucleus	52.51	51.22
TraesCS7B01G145200.1	Wheat	plastid	51.74	51.19
TraesCS7A01G246200.1	Wheat	plastid	51.85	51.13
Zm00001d015852_P004	Maize	plastid	50.54	50.93
Bra004059.1-P	Field mustard	plastid	48.04	50.92
TraesCS6B01G014400.1	Wheat	cytosol	33.33	50.92
KRH35534	Soybean	cytosol	24.62	50.45
Zm00001d031449_P001	Maize	mitochondrion	52.4	50.31
Bra004057.1-P	Field mustard	cytosol	48.8	50.28
Bra004060.1-P	Field mustard	plastid	49.24	50.28
TraesCS7A01G034900.1	Wheat	mitochondrion	16.01	50.17
Os02t0194700-01	Rice	plasma membrane	50.54	50.11
CDY61036	Canola	plastid	48.47	50.06
TraesCS5B01G006500.1	Wheat	plastid	48.04	47.52
TraesCS5D01G013400.1	Wheat	plastid	48.04	47.52
TraesCS5A01G007900.1	Wheat	plastid	47.82	47.31
HORVU7Hr1G006320.4	Barley	plastid	47.71	47.25
HORVU5Hr1G001180.1	Barley	plastid	47.6	46.94
Os12t0559200-01	Rice	plastid	47.06	46.85
HORVU6Hr1G000510.1	Barley	plastid	47.06	46.35
TraesCS6D01G010100.1	Wheat	plastid	47.39	46.33
KRH42646	Soybean	plastid	46.19	46.04
TraesCS5D01G041100.1	Wheat	plastid	47.39	46.03
KRH06197	Soybean	nucleus	45.86	45.66
TraesCS5B01G033000.1	Wheat	plastid	46.95	45.37
KRH47615	Soybean	nucleus	45.64	45.2
KRH62403	Soybean	cytosol, endoplasmic reticulum	11.11	44.93
KRH69027	Soybean	plastid	43.68	44.51
CDY61880	Canola	plastid	26.69	44.46
Os12t0560200-00	Rice	cytosol	4.79	44.44
KRH68548	Soybean	cytosol	41.29	44.17
KRH16725	Soybean	cytosol	11.11	44.16
KRG97300	Soybean	plastid	43.14	44.05
KRH62399	Soybean	cytosol, endoplasmic reticulum	11.22	43.64
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.07	43.58
KRH10050	Soybean	endoplasmic reticulum	40.63	43.52
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.3	43.22
KRH10053	Soybean	endoplasmic reticulum	40.09	43.14
KRH23268	Soybean	endoplasmic reticulum	40.09	43.14
KRH44094	Soybean	endoplasmic reticulum	40.74	43.14
KRG91271	Soybean	cytosol	40.2	43.01
KRH47525	Soybean	endoplasmic reticulum	40.63	42.97
Bra004058.1-P	Field mustard	plastid	49.46	42.91
KRH47069	Soybean	endoplasmic reticulum	21.24	42.86
KRH44090	Soybean	endoplasmic reticulum	39.76	42.44
KRH44093	Soybean	endoplasmic reticulum	39.11	42.44
KRH10882	Soybean	cytosol	20.04	42.4
KRH44097	Soybean	cytosol, endoplasmic reticulum	40.09	42.4
KRH44095	Soybean	endoplasmic reticulum	39.87	42.26
KRH23266	Soybean	cytosol	38.02	42.25
KRH23269	Soybean	endoplasmic reticulum	37.69	42.09
KRH44092	Soybean	nucleus	39.22	42.01
KRH47066	Soybean	endoplasmic reticulum, nucleus	39.22	41.91
KRH47067	Soybean	endoplasmic reticulum	39.43	41.9
KRH57987	Soybean	cytosol	11.76	41.86
CDY07407	Canola	cytosol, plastid	49.89	41.75
KRH47522	Soybean	endoplasmic reticulum, nucleus	39.32	41.73
KRH23265	Soybean	endoplasmic reticulum, nucleus	39.11	41.45
TraesCS5A01G032800.1	Wheat	mitochondrion	38.34	40.98
KRH50048	Soybean	cytosol	40.09	40.44
CDY07408	Canola	plastid	19.93	39.96
KRH13357	Soybean	endoplasmic reticulum	10.46	39.67
KRH21441	Soybean	cytosol	39.22	39.56
CDY70245	Canola	plastid	19.61	39.3
KRH47064	Soybean	endoplasmic reticulum	24.4	39.3
KRH30640	Soybean	cytosol	7.95	39.04
KRH07345	Soybean	cytosol, plastid	35.51	37.86
KRH66214	Soybean	cytosol	35.51	37.64
CDY70606	Canola	plastid	15.69	36.46
CDY61882	Canola	plastid	15.25	36.18
KRG88464	Soybean	cytosol	17.32	34.87

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100795276	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02008018	EnsemblPlantsGene:GLYMA_13G030300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1JFT4	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH17965
ProteinID:KRH17965	ProteinID:KRH17965.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF65	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI0002337033	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:9773782..9780355

Molecular Weight (calculated)

104308.0 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.431

Length

918 amino acids

Sequence
(BLAST)

001: MMTLKNSHVH QISVLNSASS FPLYICGKDT RNSHRISWFL NHSKLSLPST WRESKFHIGR VSRGMKVVMA TTTKNANTIT TSQSVKALVT VKQSGGGIIR
101: NLVNGGLDGI RELVGKTLVL ELVSDEIDSK SNSERKTKKS NVHKTETKED EVLYEATFDL PEAFGNVGAV LVQNEDHNEV FLKSIVLDGF PNGPLHFTCD
201: SWIQPKSDSP VKRVFFSDKS YLPSQTPSGL RKLREEELKQ KRGNGEGERK STDRIYDYDV YNDLGDPDSN IDLKRPVLGG TRQYPYPRRC RTGRKHSEAD
301: PSSEKKASNF YVPRDEIFSE IKQTQFTTTT ISSAVSLVLE SLDAILTDQS LGFVSFEDID TLYKEGFHVP ALQANGNALQ RVIPKLLSVV NDKQNLLRFD
401: TPDAFKRDRF FWLSDEQFAR ETLAGVNPYS IQLVKEWPLR SKLDPQIYGP PESAITKEVI EPQIIGYCTV EEAIKEKKLF MLDYHDLFLP YVRKVREIKG
501: TTLYGSRTLF FLTEQSTLKP LAIELTRPDM EGKPQWKQVF TPATHSSSHA TKLWLWRLAK AHVLAHDSGY HELVSHWLRT HCAVEPFIIA TNRQLSTMHP
601: IYRLLHPHMR YTMEINSLAR EVLISANGVI ESSFSPRKYS MEISSVAYDQ LWQFDLQALP NDLIFRGMAV ADPNAPHGLK LTIEDYPFAN DGLLIWDAIK
701: EWVSEYVNHY YPSSSTIEFD QELQAWWTEI RTVGHGDKSE EPWWPNLKTP KDLIEIITTI AWVSSAHHAA VNFAQYTYGG YFPNRPTIVR NNIPTEDPSK
801: EELEKLINNP EKTFLESLPS QIQATLVMVV LNLLSNHSPD EEYIGQYVEQ SWVENQTIKA AFERFSTKLK EIEGIIDSRN ANCDLKNRNG AGVVPYELMK
901: PFSGPGVTGK GVPYSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.