Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70165 | Soybean | cytosol | 96.6 | 97.84 |
| VIT_08s0007g07290.t01 | Wine grape | cytosol | 79.15 | 82.67 |
| GSMUA_Achr4P11110_001 | Banana | cytosol | 77.02 | 80.09 |
| PGSC0003DMT400060836 | Potato | cytosol | 75.74 | 79.82 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 74.89 | 78.92 |
| GSMUA_Achr3P29580_001 | Banana | cytosol | 74.89 | 77.88 |
| CDY38487 | Canola | cytosol | 70.21 | 77.1 |
| Bra006439.1-P | Field mustard | cytosol | 71.06 | 76.61 |
| CDX70795 | Canola | cytosol | 70.64 | 76.15 |
| CDX78777 | Canola | cytosol | 70.21 | 75.69 |
| AT5G18110.1 | Thale cress | cytosol | 71.06 | 75.57 |
| Os03t0262400-01 | Rice | cytosol | 71.91 | 74.45 |
| EER92511 | Sorghum | cytosol | 72.34 | 74.24 |
| TraesCS4D01G216800.1 | Wheat | cytosol | 73.19 | 74.14 |
| HORVU4Hr1G061500.4 | Barley | cytosol | 72.77 | 73.71 |
| TraesCS4B01G216300.1 | Wheat | cytosol | 72.77 | 73.71 |
| TraesCS4A01G087900.1 | Wheat | cytosol | 72.77 | 73.71 |
| Zm00001d028515_P001 | Maize | cytosol | 71.49 | 73.36 |
| Bra023664.1-P | Field mustard | cytosol | 68.94 | 72.32 |
| CDY02645 | Canola | cytosol | 68.94 | 72.32 |
| CDY53257 | Canola | cytosol | 68.51 | 71.88 |
| CDY49143 | Canola | cytosol | 68.51 | 71.88 |
| CDY45630 | Canola | cytosol | 68.51 | 71.88 |
| Bra002134.1-P | Field mustard | cytosol | 54.04 | 67.2 |
| HORVU2Hr1G094490.1 | Barley | plastid | 34.89 | 50.0 |
| KRG90357 | Soybean | endoplasmic reticulum | 25.53 | 30.0 |
| KRH33614 | Soybean | cytosol | 25.53 | 29.27 |
| KRH21134 | Soybean | cytosol | 25.11 | 24.89 |
| KRH11115 | Soybean | cytosol | 24.26 | 24.36 |
Protein Annotations
| EntrezGene:100499744 | MapMan:17.4.2.6 | Gene3D:3.30.760.10 | EMBL:ACUP02010182 | EnsemblPlantsGene:GLYMA_16G153800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | UniProt:I1MNU7 | InterPro:IPR023398 |
| EnsemblPlants:KRH08499 | ProteinID:KRH08499 | ProteinID:KRH08499.1 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 |
| PANTHER:PTHR11960:SF18 | SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI00023D6DB2 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:31441158..31444423
Molecular Weight (calculated)
27041.8 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.584
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFTAEKKES ESNTENAHPT TLDSSSQLAS ALDSSNKEIE ERQARELKAG LHPLKHKFVF WYTRRTPGVR NQTSYEDNIK KIVEFSTVEG FWVCYCHLAR
101: PASLPSPTDL HLFKEGIRPL WEDSANCNGG KWIIRFKKVV SGRFWEDLLI DQVLALVGDQ LDYGDNICGA VLSIRFNEDI LSVWNRNASD HQAVMALRDS
201: IKRHLKLPHS YVMEYKPHDA SLRDNSSYRN TWLRG
101: PASLPSPTDL HLFKEGIRPL WEDSANCNGG KWIIRFKKVV SGRFWEDLLI DQVLALVGDQ LDYGDNICGA VLSIRFNEDI LSVWNRNASD HQAVMALRDS
201: IKRHLKLPHS YVMEYKPHDA SLRDNSSYRN TWLRG
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
Arabidopsis Description
NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.