Factsheet for GSMUA_Achr4P11110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P11780_001
GSMUA_Achr3P28040_001
GSMUA_Achr4P05970_001
GSMUA_Achr4P05990_001
GSMUA_Achr4P06000_001
GSMUA_Achr4P12750_001
GSMUA_Achr9P12470_001
GSMUA_Achr9P22750_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	GSMUA_Achr3P11780_001	AT3G45140.1	11117257
AT5G18110.1	GSMUA_Achr9P12470_001	AT3G45140.1	11117257
AT5G18110.1	GSMUA_Achr3P28040_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_Achr4P05970_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_Achr4P05990_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_Achr4P06000_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_Achr4P12750_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_Achr9P22750_001	AT5G57870.1	21798944
AT5G18110.1	GSMUA_AchrUn_...	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29580_001	Banana	cytosol	90.71	90.71
VIT_08s0007g07290.t01	Wine grape	cytosol	77.88	78.22
KRH70165	Soybean	cytosol	79.65	77.59
KRH08499	Soybean	cytosol	80.09	77.02
Zm00001d028515_P001	Maize	cytosol	77.43	76.42
Solyc10g080660.1.1	Tomato	cytosol, nucleus	75.22	76.23
PGSC0003DMT400060836	Potato	cytosol	75.22	76.23
EER92511	Sorghum	cytosol	76.55	75.55
TraesCS4D01G216800.1	Wheat	cytosol	76.99	75.0
TraesCS4A01G087900.1	Wheat	cytosol	76.99	75.0
TraesCS4B01G216300.1	Wheat	cytosol	76.55	74.57
HORVU4Hr1G061500.4	Barley	cytosol	76.55	74.57
Os03t0262400-01	Rice	cytosol	74.78	74.45
CDX70795	Canola	cytosol	71.68	74.31
Bra006439.1-P	Field mustard	cytosol	71.68	74.31
CDY38487	Canola	cytosol	69.91	73.83
CDX78777	Canola	cytosol	70.8	73.39
AT5G18110.1	Thale cress	cytosol	71.24	72.85
CDY02645	Canola	cytosol	71.24	71.88
Bra023664.1-P	Field mustard	cytosol	70.8	71.43
CDY45630	Canola	cytosol	70.35	70.98
CDY53257	Canola	cytosol	70.35	70.98
CDY49143	Canola	cytosol	70.35	70.98
Bra002134.1-P	Field mustard	cytosol	55.31	66.14
HORVU2Hr1G094490.1	Barley	plastid	35.84	49.39
GSMUA_Achr4P25000_001	Banana	cytosol	26.11	30.73
GSMUA_Achr5P12940_001	Banana	cytosol	25.66	27.75
GSMUA_Achr4P12820_001	Banana	cytosol	27.88	25.61
GSMUA_Achr3P02580_001	Banana	cytosol	24.78	24.45

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G11110_001	EnsemblPlants:GSMUA_Achr4P11110_001	EnsemblPlants:GSMUA_Achr4T11110_001	InterPro:IPR023398	UniProt:M0SMX6
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0002963A9E	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 4E type 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11110_001]

Coordinates

chr4:+:7980846..7985828

Molecular Weight (calculated)

25768.3 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.532

Length

226 amino acids

Sequence
(BLAST)

001: MESAEEAETK GSASPPPSAT AASAAVEAEG DMEERERYSR EIKSGLHPLK HKFVFWYTRR TPGVRSQTSY EDNIKKIVEF STVEAFWVCY CHLARSSSLP
101: SPTDLHLFKE GIRPLWEDAA NCNGGKWILR FKKVVSGRFW EDLVLALVGD QLDYGDDVCG AVLSIRFNED ILSVWNRNAS DHKAVMALRD SIKRHLKLPH
201: SYLMEYKPHD ASLRDNSSYR NTWLRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.