Factsheet for Solyc10g080660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006540.2.1
Solyc01g006560.2.1
Solyc01g009680.2.1
Solyc07g005780.1.1
Solyc07g005810.2.1
Solyc12g009960.1.1
Solyc12g011040.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	Solyc01g006540.2.1	AT3G45140.1	11117257
AT5G18110.1	Solyc01g006560.2.1	AT3G45140.1	11117257
AT5G18110.1	Solyc01g009680.2.1	AT3G45140.1	11117257
AT5G18110.1	Solyc12g011040.1.1	AT3G45140.1	11117257
AT5G18110.1	Solyc07g005780.1.1	AT5G57870.1	21798944
AT5G18110.1	Solyc07g005810.2.1	AT5G57870.1	21798944
AT5G18110.1	Solyc12g009960.1.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060836	Potato	cytosol	97.76	97.76
VIT_08s0007g07290.t01	Wine grape	cytosol	82.06	81.33
KRH70165	Soybean	cytosol	78.92	75.86
GSMUA_Achr4P11110_001	Banana	cytosol	76.23	75.22
KRH08499	Soybean	cytosol	78.92	74.89
GSMUA_Achr3P29580_001	Banana	cytosol	75.78	74.78
Bra006439.1-P	Field mustard	cytosol	71.75	73.39
CDX70795	Canola	cytosol	71.3	72.94
CDX78777	Canola	cytosol	70.85	72.48
Os03t0262400-01	Rice	cytosol	72.65	71.37
AT5G18110.1	Thale cress	cytosol	70.4	71.04
CDY38487	Canola	cytosol	68.16	71.03
EER92511	Sorghum	cytosol	72.65	70.74
Zm00001d028515_P001	Maize	cytosol	71.75	69.87
HORVU4Hr1G061500.4	Barley	cytosol	72.65	69.83
TraesCS4A01G087900.1	Wheat	cytosol	72.65	69.83
TraesCS4D01G216800.1	Wheat	cytosol	72.2	69.4
TraesCS4B01G216300.1	Wheat	cytosol	71.75	68.97
CDY53257	Canola	cytosol	68.61	68.3
CDY49143	Canola	cytosol	68.61	68.3
CDY45630	Canola	cytosol	68.61	68.3
CDY02645	Canola	cytosol	68.61	68.3
Bra023664.1-P	Field mustard	cytosol	68.61	68.3
Bra002134.1-P	Field mustard	cytosol	54.26	64.02
HORVU2Hr1G094490.1	Barley	plastid	37.22	50.61
Solyc02g021550.2.1	Tomato	cytosol	25.11	30.27
Solyc09g090580.2.1	Tomato	nucleus	24.66	27.5
Solyc03g005870.2.1	Tomato	cytosol, nucleus	26.46	25.54

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023398	UniProt:K4D2V6	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960
PANTHER:PTHR11960:SF18	SUPFAM:SSF55418	EnsemblPlantsGene:Solyc10g080660.1	EnsemblPlants:Solyc10g080660.1.1	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E
InterPro:TIF_eIF_4E_CS	UniParc:UPI0002769601	:	:	:	:

Description

No Description!

Coordinates

chr10:-:61883914..61887453

Molecular Weight (calculated)

25576.4 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.448

Length

223 amino acids

Sequence
(BLAST)

001: MEVTSEKKEL DNKNTNSTQS LIIDPSIAAE DRERIAVDLK AGLHPLKNKF VFWYTRRTPG VRTQTSYEDN IKKIVDFSTV EGFWVCYCHL ARPSALPSPT
101: DLHLFREGIR PLWEDAANCH GGKWIIRFKK AVSGRFWEDL VLALVGDQLD YGDNICGAVL SIRFNEDILS VWNRNASDQQ AVMALRDSIK RHLKLPGGYI
201: MEYKAHDASL RDNSSYRNTW IRS

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.