Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044186 | Potato | cytosol | 90.5 | 90.5 |
| VIT_05s0049g01770.t01 | Wine grape | cytosol | 77.5 | 75.98 |
| GSMUA_Achr4P25000_001 | Banana | cytosol | 67.5 | 70.31 |
| KRG90357 | Soybean | endoplasmic reticulum | 69.0 | 69.0 |
| Bra035393.1-P | Field mustard | cytosol | 68.5 | 68.84 |
| KRH33614 | Soybean | cytosol | 70.0 | 68.29 |
| Bra039484.1-P | Field mustard | cytosol | 67.0 | 67.68 |
| CDY38545 | Canola | cytosol | 67.0 | 67.68 |
| Os10t0467600-01 | Rice | cytosol, plastid | 69.5 | 67.48 |
| CDY33686 | Canola | cytosol | 67.0 | 67.34 |
| AT5G35620.1 | Thale cress | cytosol | 65.0 | 65.66 |
| TraesCS1B01G167100.1 | Wheat | cytosol | 68.0 | 65.07 |
| GSMUA_Achr5P12940_001 | Banana | cytosol | 67.5 | 64.59 |
| EER94108 | Sorghum | cytosol | 67.0 | 63.81 |
| CDY06456 | Canola | cytosol | 61.5 | 63.4 |
| TraesCS1D01G146500.1 | Wheat | golgi | 65.5 | 62.68 |
| CDY49364 | Canola | cytosol | 62.5 | 62.5 |
| Zm00001d014065_P001 | Maize | cytosol, extracellular | 67.5 | 62.5 |
| Zm00001d032775_P002 | Maize | cytosol, extracellular | 65.5 | 62.38 |
| HORVU1Hr1G039260.2 | Barley | cytosol | 65.5 | 62.38 |
| Bra035531.1-P | Field mustard | cytosol | 62.0 | 62.0 |
| TraesCS1A01G149200.1 | Wheat | cytosol | 66.0 | 61.97 |
| CDX84118 | Canola | cytosol | 61.0 | 61.0 |
| CDX74645 | Canola | cytosol | 69.0 | 60.53 |
| Solyc02g021550.2.1 | Tomato | cytosol | 42.0 | 45.41 |
| Solyc03g005870.2.1 | Tomato | cytosol, nucleus | 47.0 | 40.69 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 27.5 | 24.66 |
Protein Annotations
| MapMan:17.4.2.4.1 | Gene3D:3.30.760.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006950 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009615 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0050687 | InterPro:IPR023398 | UniProt:K4CW84 | PFAM:PF01652 | ScanProsite:PS00813 |
| PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 | EnsemblPlantsGene:Solyc09g090580.2 | EnsemblPlants:Solyc09g090580.2.1 | InterPro:TIF_eIF4e-like |
| InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI000276AF93 | : | : | : |
Description
Eukaryotic translation initiation factor isoform 4E [Source:Projected from Arabidopsis thaliana (AT5G35620) UniProtKB/Swiss-Prot;Acc:O04663]
Coordinates
chr9:-:70062777..70066160
Molecular Weight (calculated)
22823.7 Da
IEP (calculated)
5.817
GRAVY (calculated)
-0.643
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEAPVEAT EIPSVAAAET VEKQPHKLER KWTFWFDNQS KPKQGVAWGS SLRKAYTFET VEEFWSLYDQ IFKPSKVTVN ADFHLFKAGI EPKWEDPECA
101: NGGKWTATSS RKANLETMWL ETLMALVGEQ FDESEDICGV VASVRRSQDK LSLWTKTATN EAAQMGIGRK WKEIIDAEKI SYSFHDDSKR ERSAKSRYTV
101: NGGKWTATSS RKANLETMWL ETLMALVGEQ FDESEDICGV VASVRRSQDK LSLWTKTATN EAAQMGIGRK WKEIIDAEKI SYSFHDDSKR ERSAKSRYTV
001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV
Arabidopsis Description
EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.