Factsheet for VIT_05s0049g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06770.t01
VIT_11s0037g00490.t01
VIT_13s0064g01480.t01
VIT_13s0064g01490.t01
VIT_13s0064g01500.t01
VIT_17s0053g00620.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	VIT_17s0053g00620.t01	AT1G17880.1	15716105
AT5G35620.1	VIT_13s0064g01480.t01	AT3G45140.1	11117257
AT5G35620.1	VIT_13s0064g01490.t01	AT3G45140.1	11117257
AT5G35620.1	VIT_13s0064g01500.t01	AT3G45140.1	11117257
AT5G35620.1	VIT_04s0008g06770.t01	AT5G57870.1	21798944
AT5G35620.1	VIT_11s0037g00490.t01	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044186	Potato	cytosol	76.47	78.0
Solyc09g090580.2.1	Tomato	nucleus	75.98	77.5
GSMUA_Achr4P25000_001	Banana	cytosol	72.55	77.08
KRG90357	Soybean	endoplasmic reticulum	69.61	71.0
Os10t0467600-01	Rice	cytosol, plastid	70.59	69.9
TraesCS1B01G167100.1	Wheat	cytosol	71.57	69.86
KRH33614	Soybean	cytosol	70.1	69.76
GSMUA_Achr5P12940_001	Banana	cytosol	70.1	68.42
TraesCS1D01G146500.1	Wheat	golgi	69.61	67.94
AT5G35620.1	Thale cress	cytosol	65.69	67.68
CDY38545	Canola	cytosol	65.69	67.68
HORVU1Hr1G039260.2	Barley	cytosol	69.61	67.62
CDY06456	Canola	cytosol	64.22	67.53
Bra039484.1-P	Field mustard	cytosol	65.2	67.17
Bra035393.1-P	Field mustard	cytosol	65.2	66.83
CDY33686	Canola	cytosol	65.2	66.83
EER94108	Sorghum	cytosol	68.63	66.67
TraesCS1A01G149200.1	Wheat	cytosol	69.12	66.2
CDY49364	Canola	cytosol	64.22	65.5
Bra035531.1-P	Field mustard	cytosol	64.22	65.5
CDX84118	Canola	cytosol	63.73	65.0
Zm00001d032775_P002	Maize	cytosol, extracellular	66.67	64.76
Zm00001d014065_P001	Maize	cytosol, extracellular	67.65	63.89
CDX74645	Canola	cytosol	64.71	57.89
VIT_10s0003g02250.t01	Wine grape	cytosol	50.98	44.07
VIT_08s0007g07290.t01	Wine grape	cytosol	28.92	26.22

Protein Annotations

EntrezGene:100259631	wikigene:100259631	MapMan:17.4.2.4.1	Gene3D:3.30.760.10	ProteinID:CCB48619	ProteinID:CCB48619.1
UniProt:F6H8U4	EMBL:FN595496	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023398	EntrezGene:LOC100259631	wikigene:LOC100259631	PFAM:PF01652	ScanProsite:PS00813
PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	TIGR:TC56764	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E
InterPro:TIF_eIF_4E_CS	UniParc:UPI0001983546	ArrayExpress:VIT_05s0049g01770	EnsemblPlantsGene:VIT_05s0049g01770	EnsemblPlants:VIT_05s0049g01770.t01	unigene:Vvi.7473
RefSeq:XP_002285444	RefSeq:XP_002285444.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:9208862..9219661

Molecular Weight (calculated)

23080.1 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.619

Length

204 amino acids

Sequence
(BLAST)

001: MASEAAGMES GAAGMESGAA PTEAAKQPHR LERKWTFWFD NQSKPKQGAA WGTSLRKAYT FETVEEFWCL YDQIFKPSKL PANADFHLFK AGVEPKWEDP
101: ECANGGKWTV ASSRKGNLDT MWLETLMALI GEQFDEADEI CGVVASVRQR QDKLALWTKT ATNEAAQMSI GRKWKEVIDV TDKITYSFHD DSRRERSVKV
201: RYNV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.