Factsheet for VIT_13s0064g01490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g01770.t01
VIT_08s0007g07290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	VIT_08s0007g07290.t01	AT5G18110.1	11117257
AT3G45140.1	VIT_05s0049g01770.t01	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G047210.1	Barley	cytosol	36.09	66.36
Os12t0559934-00	Rice	cytosol	31.83	65.13
VIT_13s0064g01480.t01	Wine grape	plastid	92.48	40.86
VIT_06s0004g01580.t01	Wine grape	cytosol	30.33	36.12
VIT_06s0004g01500.t01	Wine grape	cytosol	68.67	34.64
HORVU7Hr1G050680.1	Barley	peroxisome	59.15	34.5
CDY61880	Canola	plastid	47.37	34.3
VIT_06s0004g01480.t01	Wine grape	cytosol	68.17	34.3
GSMUA_Achr3P11780_001	Banana	plastid	69.17	32.62
CDY16339	Canola	plastid	61.4	32.19
CDY61034	Canola	cytosol	35.34	31.54
VIT_06s0004g01460.t01	Wine grape	plastid	46.62	31.1
GSMUA_Achr9P12470_001	Banana	plastid	65.16	30.84
VIT_06s0004g01510.t01	Wine grape	plastid	68.17	30.19
VIT_06s0004g01470.t01	Wine grape	cytosol	67.92	30.01
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	62.91	29.22
OQU80925	Sorghum	cytosol	62.66	28.9
Bra004059.1-P	Field mustard	plastid	62.66	28.87
CDY04196	Canola	plastid	63.91	28.68
CDY61036	Canola	plastid	62.66	28.12
AT3G45140.1	Thale cress	plastid	62.66	27.9
Bra004060.1-P	Field mustard	plastid	62.66	27.81
Bra004057.1-P	Field mustard	cytosol	61.65	27.61
TraesCS6B01G014400.1	Wheat	cytosol	41.35	27.45
CDX79416	Canola	plastid	62.16	27.43
CDX67920	Canola	plastid	62.16	27.43
Bra003526.1-P	Field mustard	plastid	61.9	27.32
CDX91565	Canola	plastid	60.65	26.89
CDY07408	Canola	plastid	30.83	26.86
Zm00001d015852_P004	Maize	plastid	60.9	26.67
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	42.61	26.65
CDY70245	Canola	plastid	30.58	26.64
TraesCS5D01G013400.1	Wheat	plastid	61.65	26.51
TraesCS5B01G006500.1	Wheat	plastid	61.65	26.51
TraesCS5A01G007900.1	Wheat	plastid	61.65	26.51
Os08t0509100-01	Rice	nucleus	62.41	26.46
Zm00001d053675_P001	Maize	plastid	59.9	26.41
Os08t0508800-01	Rice	nucleus, plasma membrane	60.9	26.3
TraesCS4D01G347300.1	Wheat	cytosol	58.15	26.21
KXG29701	Sorghum	plastid	60.15	26.17
HORVU6Hr1G033600.1	Barley	plastid	58.4	26.0
HORVU5Hr1G001180.1	Barley	plastid	60.65	25.99
Zm00001d031449_P001	Maize	mitochondrion	62.16	25.94
HORVU7Hr1G006320.4	Barley	plastid	60.15	25.89
TraesCS7B01G145200.1	Wheat	plastid	59.9	25.75
Os02t0194700-01	Rice	plasma membrane	59.65	25.7
TraesCS7A01G246200.1	Wheat	plastid	59.9	25.67
TraesCS7D01G244800.1	Wheat	plastid	59.9	25.64
TraesCS6B01G193400.1	Wheat	plastid	57.89	25.64
TraesCS6A01G166000.1	Wheat	golgi	57.64	25.53
TraesCS6D01G154600.1	Wheat	plastid	57.39	25.42
TraesCS6D01G010100.1	Wheat	plastid	58.15	24.71
HORVU6Hr1G000510.1	Barley	plastid	57.64	24.68
Os12t0559200-01	Rice	plastid	56.89	24.62
VIT_00s0265g00170.t01	Wine grape	cytosol	30.83	24.36
TraesCS5D01G041100.1	Wheat	plastid	57.14	24.13
CDY70606	Canola	plastid	23.81	24.05
CDY61882	Canola	plastid	23.31	24.03
VIT_01s0010g02750.t01	Wine grape	plastid	55.14	23.91
TraesCS5B01G033000.1	Wheat	plastid	56.39	23.68
VIT_07s0289g00010.t01	Wine grape	cytosol	28.07	23.48
Bra004058.1-P	Field mustard	plastid	61.9	23.35
CDY07407	Canola	cytosol, plastid	63.16	22.97
Bra022535.1-P	Field mustard	plastid	46.37	22.81
CDY07409	Canola	cytosol	22.06	22.74
VIT_14s0128g00780.t01	Wine grape	cytosol	47.87	22.24
VIT_14s0128g00790.t01	Wine grape	cytosol	47.62	21.86
VIT_09s0002g01080.t01	Wine grape	cytosol	50.38	21.68
VIT_05s0020g03170.t01	Wine grape	cytosol	46.12	21.0
TraesCS5A01G032800.1	Wheat	mitochondrion	43.86	20.37
CDY61881	Canola	cytosol	16.54	18.59
CDY72550	Canola	cytosol	10.78	13.4
TraesCS7A01G034900.1	Wheat	mitochondrion	0.75	1.02
VIT_13s0064g01500.t01	Wine grape	cytosol	0.0	0.0
Os12t0560200-00	Rice	cytosol	0.0	0.0
TraesCS7D01G029400.1	Wheat	cytosol	0.0	0.0
CDY70843	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12	ProteinID:CCB49474
ProteinID:CCB49474.1	ncoils:Coil	UniProt:F6HB90	EMBL:FN595509	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SUPFAM:SSF48484	UniParc:UPI000210A0FE
ArrayExpress:VIT_13s0064g01490	EnsemblPlantsGene:VIT_13s0064g01490	EnsemblPlants:VIT_13s0064g01490.t01	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HB90]

Coordinates

chr13:+:23394903..23396822

Molecular Weight (calculated)

45683.2 Da

IEP (calculated)

7.617

GRAVY (calculated)

-0.319

Length

399 amino acids

Sequence
(BLAST)

001: MQYYSASGLK KLREIELENL RGNGKGERKT SDKIYDYDTY NDLWDPDDSK DLARPILGGQ DHPYPRRCRT GRPSSKKDPL SETRSSSVYV PRDEAFEEVK
101: QMTFSTKTLK SVLHALLPQV EIMLLDPHLV FPYFTAIDLL FQGVPLPKSK NFFQSIIPRL VKTIAEGEGD ILLFETPAMI DRDKFLVSEW PLKSKLDPGI
201: YGPPESLITA KLIEREIKGV MTIDEALKQK KMFILDYHDL LLPYVNKVRE IEGTTLYGSR TLFFLTMDGT LRPLAIELTR PPVGDKLQWK QVFTPGWDGT
301: SCWLWRLAKA HVCAHDSGYH QLVHWLRTHC CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINALAQES LINAGGIIES CFSPGKYAIE LSSAAYDRL

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.