CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92511
EER94108

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	EER92511	AT5G18110.1	11117257
AT3G45140.1	EER94108	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053675_P001	Maize	plastid	87.79	88.95
Zm00001d015852_P004	Maize	plastid	87.02	87.6
HORVU6Hr1G033600.1	Barley	plastid	71.43	73.1
TraesCS6B01G193400.1	Wheat	plastid	71.76	73.03
TraesCS6A01G166000.1	Wheat	golgi	71.54	72.81
TraesCS6D01G154600.1	Wheat	plastid	71.43	72.7
Os02t0194700-01	Rice	plasma membrane	71.21	70.52
Solyc01g009680.2.1	Tomato	plastid	30.86	63.88
CDY61034	Canola	cytosol	30.97	63.53
CDY07409	Canola	cytosol	26.39	62.53
CDY72550	Canola	cytosol	21.81	62.31
VIT_13s0064g01500.t01	Wine grape	cytosol	16.68	61.2
VIT_13s0064g01490.t01	Wine grape	cytosol	26.17	60.15
PGSC0003DMT400020118	Potato	cytosol	44.38	58.73
CDY70843	Canola	cytosol	7.96	57.94
VIT_06s0004g01500.t01	Wine grape	cytosol	49.18	57.02
VIT_13s0064g01480.t01	Wine grape	plastid	55.73	56.59
KRH29668	Soybean	nucleus	55.62	56.29
Solyc01g006540.2.1	Tomato	plastid	54.74	56.03
VIT_06s0004g01480.t01	Wine grape	cytosol	48.42	55.99
KRH29669	Soybean	plastid	54.85	55.83
PGSC0003DMT400081909	Potato	plastid	54.63	55.73
OQU80925	Sorghum	cytosol	52.56	55.72
KRH24671	Soybean	cytosol, plastid	55.51	55.69
CDY61881	Canola	cytosol	21.37	55.21
VIT_06s0004g01510.t01	Wine grape	plastid	54.2	55.16
KRG89889	Soybean	cytosol, plastid	50.71	54.07
VIT_06s0004g01460.t01	Wine grape	plastid	35.22	54.01
Solyc01g006560.2.1	Tomato	plastid	53.0	53.88
KRG89883	Soybean	cytosol, plastid	49.73	53.09
VIT_06s0004g01470.t01	Wine grape	cytosol	51.15	51.94
CDY04196	Canola	plastid	50.27	51.86
Solyc12g011040.1.1	Tomato	nucleus, plastid	50.38	51.79
CDX91565	Canola	plastid	50.71	51.67
AT3G45140.1	Thale cress	plastid	50.16	51.34
KRH17965	Soybean	plastid	51.36	51.31
Bra004059.1-P	Field mustard	plastid	48.42	51.27
KRG89888	Soybean	nucleus	50.38	51.16
KRH18682	Soybean	cytosol, mitochondrion	50.82	51.15
Bra004057.1-P	Field mustard	cytosol	49.62	51.07
CDX67920	Canola	plastid	50.16	50.88
Bra003526.1-P	Field mustard	plastid	50.05	50.77
CDY61036	Canola	plastid	49.07	50.62
Bra004060.1-P	Field mustard	plastid	49.51	50.5
CDX79416	Canola	plastid	49.73	50.44
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.67	49.83
CDY16339	Canola	plastid	41.11	49.54
Bra022535.1-P	Field mustard	plastid	43.62	49.32
CDY61880	Canola	plastid	27.26	45.37
Bra004058.1-P	Field mustard	plastid	49.73	43.1
CDY07407	Canola	cytosol, plastid	50.82	42.48
EER93612	Sorghum	cytosol	39.04	41.34
EES10882	Sorghum	plastid	41.44	41.13
EER95400	Sorghum	mitochondrion	41.22	40.91
EES04028	Sorghum	cytosol	38.28	40.21
EER93611	Sorghum	cytosol	38.93	40.2
CDY70245	Canola	plastid	20.07	40.17
EES04025	Sorghum	cytosol	37.95	40.09
KXG37783	Sorghum	cytosol	38.82	39.87
CDY07408	Canola	plastid	19.85	39.74
KXG23911	Sorghum	cytosol, plastid	23.34	39.27
CDY70606	Canola	plastid	16.9	39.24
KXG24148	Sorghum	cytosol	36.53	39.09
CDY61882	Canola	plastid	16.03	37.98
KXG27309	Sorghum	mitochondrion, plastid	35.01	35.39

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A0A194YND7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KXG29701	ProteinID:KXG29701	ProteinID:KXG29701.1	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
SMART:SM00308	EnsemblPlantsGene:SORBI_3004G078600	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0001C80D63	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:6461422..6465436

Molecular Weight (calculated)

103720.0 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.429

Length

917 amino acids

Sequence
(BLAST)

001: MINLNLKQPL MLPAHQSNVV VGSRLASSPS AAAVSRPRRG GAGVSSSSSR SRSSSRRHTR LPRISCSATE EVSGAVAAVT VEPPQMLTVT ATVEASPAIG
101: QMYFERALDD VGDLLGKTLL LELVSSELDA KSGLEKPRVA AFAHKTLREG HYEAEFKLPA SFGPVGAVLV ENEHHKEIFI REIKLVTGGD TSTAVTFDCN
201: SWVHSKFDNP NKRIFFTLKS YLPSDTPKGL EELRKKDLQA LRGDGSGERR LFERVYDYDV YNDLGDPDKH PTHQRPILGG SKRFPYPRRC RTGRPRTKSD
301: PQTEKRDGRH HYVPRDEQFS EVKQLTFGAT TLRSGLHALL PAIRPLLQNR KELRFPHFPS IDGLYSDGIP LPAQTGFDAI RSVVPRVVKL VGETTDHVLR
401: FEVPEMIERD RFSWFKDEEF ARQTIAGLNP VCIQLLREFP IRSKLDEEVY GPAESAITKE ILEKQMNGAM TVEQAVAAKR LFILDYHDVF LPYVHKVREL
501: PDTTLYGSRT VFFLTDLGTL MPLAIELTRP KSPTKPQWKR VFTHGPDATD AWLWKLAKAH VLTHDTGYHQ LVSHWLRTHC CVEPYIIAAN RQLSRLHPVY
601: RLLHPHFRYT MEINALAREA LINADGIIEE SFWPGKYAVE LSSVAYGATW QFDTEALPND LVKRGLAVRR DGDGDGELEL TIKDYPYAHD GLMIWNSIKQ
701: WVTDYVGVYY KSDEAVAGDT ELKAFWDEVR NVGHGDKKDE PWWPVLNTRD SLVETLTTIM WVTSGHHSAV NFGQYHYGGY FPNRPTTIRK NMPVEEGRDE
801: EMRKFLSQPE TTLLDMMPTQ MQAIRIMTTL DILSSHSPDE EYMGEFAEPS WLVEPMVKAA FEKFSGRMKE IEGFIDECNN NPENKNRFGA GIVPYELLKP
901: FSKPGVTGRG IPYSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.