CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041204_P001	Maize	cytosol	87.51	88.24
KXG23911	Sorghum	cytosol, plastid	51.81	81.47
TraesCS1B01G226400.1	Wheat	cytosol	77.95	79.15
HORVU1Hr1G054390.4	Barley	cytosol	77.71	78.91
TraesCS1D01G215800.2	Wheat	cytosol	77.71	78.72
TraesCS1A01G212900.1	Wheat	cytosol	77.13	78.32
Os05t0304600-01	Rice	plastid	75.5	76.39
GSMUA_Achr2P05850_001	Banana	cytosol	60.56	63.06
PGSC0003DMT400074322	Potato	cytosol	29.05	56.33
Solyc09g055900.2.1	Tomato	cytosol	29.64	54.98
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	39.09	52.51
VIT_07s0289g00010.t01	Wine grape	cytosol	27.65	49.69
KRH66214	Soybean	cytosol	48.66	48.15
KRH07345	Soybean	cytosol, plastid	47.96	47.74
EER93612	Sorghum	cytosol	45.97	45.5
KXG37783	Sorghum	cytosol	46.44	44.57
EER93611	Sorghum	cytosol	45.74	44.14
EES04025	Sorghum	cytosol	44.46	43.89
EES04028	Sorghum	cytosol	43.64	42.84
OQU80925	Sorghum	cytosol	40.37	40.0
EES10882	Sorghum	plastid	41.07	38.1
EER95400	Sorghum	mitochondrion	40.84	37.88
KXG29701	Sorghum	plastid	39.09	36.53
KXG27309	Sorghum	mitochondrion, plastid	38.27	36.16
Solyc09g055890.2.1	Tomato	cytosol	15.52	35.85
PGSC0003DMT400074324	Potato	cytosol	14.12	34.97

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
UniProt:A0A1B6PEP8	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KXG24148	ProteinID:KXG24148	ProteinID:KXG24148.1
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308
EnsemblPlantsGene:SORBI_3008G191000	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0003C6C1EB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:62495797..62499472

Molecular Weight (calculated)

96737.6 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.406

Length

857 amino acids

Sequence
(BLAST)

001: MQMPFCWDKR SPAHAPADNH VAINGTVVVS CHLGLSSPGK TTTLRLFSTT QMDPNTGKGK LSPEAPLRSG KKTKAKQGAV KTTTMTYQVT FFVDADFGTP
101: GAVVVKSGLR NDHFFLRHVQ VHMPEAGRTI HFECNSWVYP FKKTNADRVF FINTSYLPDK TPEALRLLRD EELRSLRGSG RGELKDWERV YDYDLYNDLG
201: NPDKEEHARP VLGGITSVYP YPRRCRTGRP LFKTDGATET RKHMINLDFY IPPDERFSPT KLAEVLTLAV QAVTHFVLPE SKALFHGNIN SFRSLEQLKG
301: DLYRKPVVDG QVVMDKLKTS VPSHKTYKQV SKMVKETPVK FPIPQVIQNE PEAWRSDEEF AREMLAGLNP VVIKRLEVFP PVSRGGKQSS ITAAHIERQG
401: QLEGRTVHKA LDEKRLYILD HHDYLMPYLR RINTQEQGVC VYASRTLLFL KDDGTLKPLV IELSLPSDGA GADGEISRVF LPASPGTTDG HLWWLAKAHV
501: SVNDSGYHQL ISHWLFTHAT VEPFIIATKR QLSAMHPIHK LLEPHFKDNM QINTLARSIL LSAGGILERT MFPGKYAMEM SSAIYSEWRF TEQSLPNDLV
601: KRGMASSSNK DHLHLHVEDY PYAVDGMDVW RAIDGWVRSY CAHFYHSDAA VAADAELQAW WHDVRTVGHG DRQRDRACWL DLDTVANLVE SLSTLIWIAS
701: ALHAAVNFGQ YGYAGFMPNR PTRCRRFVPL PGSPEMAQLE ADPDRFFLDT VPDRFTTTLG LTLIEVLSNH TSDELYLGQR ATASWTDDGE VLQLLDRFRD
801: DLRRVEKRVT ERNKDLRLKN RKGPAKVPYT LLFPDVGNVG AKEKGITGKG IPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.