CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041204_P001	Maize	cytosol	81.28	52.12
KXG24148	Sorghum	cytosol	81.47	51.81
TraesCS1B01G226400.1	Wheat	cytosol	70.83	45.73
HORVU1Hr1G054390.4	Barley	cytosol	70.83	45.73
TraesCS1D01G215800.2	Wheat	cytosol	70.64	45.51
TraesCS1A01G212900.1	Wheat	cytosol	70.46	45.5
Os05t0304600-01	Rice	plastid	70.28	45.22
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	51.19	43.73
VIT_07s0289g00010.t01	Wine grape	cytosol	35.05	40.04
GSMUA_Achr2P05850_001	Banana	cytosol	57.06	37.79
Solyc09g055890.2.1	Tomato	cytosol	24.04	35.31
PGSC0003DMT400074324	Potato	cytosol	22.39	35.26
KRH66214	Soybean	cytosol	46.42	29.21
KRH07345	Soybean	cytosol, plastid	45.69	28.92
EER93612	Sorghum	cytosol	43.12	27.14
KXG37783	Sorghum	cytosol	43.3	26.43
EER93611	Sorghum	cytosol	41.83	25.68
EES04025	Sorghum	cytosol	40.0	25.12
EES04028	Sorghum	cytosol	39.82	24.86
OQU80925	Sorghum	cytosol	38.35	24.16
KXG29701	Sorghum	plastid	39.27	23.34
EER95400	Sorghum	mitochondrion	38.17	22.51
EES10882	Sorghum	plastid	37.98	22.4
KXG27309	Sorghum	mitochondrion, plastid	35.6	21.39
Solyc09g055900.2.1	Tomato	cytosol	17.25	20.35
PGSC0003DMT400074322	Potato	cytosol	16.15	19.91

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
UniProt:A0A1B6PDY2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KXG23911	ProteinID:KXG23911	ProteinID:KXG23911.1
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SMART:SM00308	EnsemblPlantsGene:SORBI_3008G157900	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI00081AD6D9	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:59049696..59055659

Molecular Weight (calculated)

61612.0 Da

IEP (calculated)

9.247

GRAVY (calculated)

-0.396

Length

545 amino acids

Sequence
(BLAST)

001: MQIASCSNLC DQSPPALARE DFIAINGTVV VSCHFGLSLP GKTTMLRLFS STRLDHNTGM GYLSAEAPLR GGKKTRHGAG KTNTMTYQVT FFVDADFGTP
101: GAVVVKNGLR NDQIFLRYVQ LDLPEDGRSI HFECNSWVYP YKKTNADRVF FMNTSYLPDK TPDALRLLRD MELRSLRGNG RGERRDWERV YDYDYYNDLG
201: DPDKKDKDHA RPVLGGTAVH PYPRRCRTGR PLFKTDGVTE TRSKRMINLD FYVPPDERFS PTKLAEVLTL AVQAVTHFVV PESKALLRAN LVNSFRSFQQ
301: LRGDLYSRRS PRQPVAVDAQ VMDRLKASLP SRKTYMQVSK MVKETPVMFP IPQVIEGEAE AWRSDEEFAR EMLAGLNPVV IKRLEVFPPV SRGGKQSSIT
401: AAHIEKQLEG RTVAKALDEK RLYILDHHDY LMPYLERINR QQGVCVYASR TLLFLKDDGT LKPLAIELSL PSPSDDGEIS RVFLPASQGT TDGQLWLLAK
501: AHVSVNDSGY HQLISHWLLT HATVEPFIIA TKRHLSAMHP IHMTD

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.