Factsheet for Os05t0304600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G054390.4	Barley	cytosol	79.1	79.38
TraesCS1B01G226400.1	Wheat	cytosol	78.87	79.15
TraesCS1A01G212900.1	Wheat	cytosol	78.39	78.67
TraesCS1D01G215800.2	Wheat	cytosol	78.39	78.49
Zm00001d041204_P001	Maize	cytosol	78.04	77.76
KXG24148	Sorghum	cytosol	76.39	75.5
KXG23911	Sorghum	cytosol, plastid	45.22	70.28
GSMUA_Achr2P05850_001	Banana	cytosol	60.92	62.7
PGSC0003DMT400074322	Potato	cytosol	29.87	57.24
Solyc09g055900.2.1	Tomato	cytosol	30.7	56.28
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	39.2	52.04
Os12t0559934-00	Rice	cytosol	11.33	49.23
VIT_07s0289g00010.t01	Wine grape	cytosol	27.27	48.43
KRH66214	Soybean	cytosol	48.88	47.81
KRH07345	Soybean	cytosol, plastid	48.41	47.62
Os03t0700400-00	Rice	cytosol, plasma membrane	6.85	46.03
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	46.99	45.38
Os03t0699700-01	Rice	cytosol, plastid	45.93	45.08
Os11t0575600-01	Rice	mitochondrion	44.51	43.43
Os03t0738600-01	Rice	plasma membrane, plastid	44.51	43.33
Os04t0447100-01	Rice	cytosol	38.96	41.46
Os08t0508800-01	Rice	nucleus, plasma membrane	40.61	37.23
Os08t0509100-01	Rice	nucleus	40.61	36.56
Os03t0179900-01	Rice	plastid	39.32	36.27
Os02t0194700-01	Rice	plasma membrane	38.84	35.53
Os12t0560200-00	Rice	cytosol	4.13	35.35
Os12t0559200-01	Rice	plastid	38.37	35.25
Solyc09g055890.2.1	Tomato	cytosol	14.64	33.42
PGSC0003DMT400074324	Potato	cytosol	13.46	32.95

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	EntrezGene:4338358
MapMan:50.1.12	ProteinID:BAF17057.1	ProteinID:BAS93255.1	ProteinID:BAS93256.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3
EnsemblPlantsGene:Os05g0304600	EnsemblPlants:Os05t0304600-01	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF59	UniProt:Q0DJB6	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0000E12422
RefSeq:XP_015639185.1	SEG:seg	:	:	:	:

Description

LIPOXYGENASE 7Similar to Lipoxygenase (Fragment). (Os05t0304600-01);Similar to Lipoxygenase. (Os05t0304600-02)

Coordinates

chr5:+:13734777..13740470

Molecular Weight (calculated)

95348.4 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.434

Length

847 amino acids

Sequence
(BLAST)

001: MQMPFCPKLW SSAAPAPVQP GSVVINGTVV VANHFGLSAP GKSTTLRLFS GTEVDHETRK GRLSAEAALR GGKKTRHGKA STTMYQVTFF VDGEFGTPGA
101: VAVKNGNRND QFFLRHVRLD LAEDRSIHFD CNSWVYPYKK TTSDRVFFIN TSYLPDKTPE ALRLLREEEL RSLRGNGRGE RKDWERIYDF DYYNDLGNPD
201: NDDHVRPVLG GTKTHPYPRR CRTGRPLSKT DGVTETRKHK LINLDYYIPP DERFSPGKLA EVLAMGVQAV THFVIPEARS IFHGDVVNFK STEQLRADLY
301: GKPPQPAADA RVMDELKSSV PSHKTYKQVS RIVKDNPAKF PTPQVIHYDT EAWRSDEEFA REMLAGLNPV VIKRLEVFPP NKSKITTDDI MTQIGGLTIQ
401: QAMEQKRMYI LDHHDYLMPY LRRINTEGVC VYASRTLLFL RDDGALRPVA IELSLPDGGV GGSEISRVFL PASQGTDAHL WHLAKTHVAV NDSGYHQLIS
501: HWLFTHATVE PFIIATRRQL SAMHPIHKLL DPHFKDNMQI NTLARSILLN AGGLLEKTMY PGKYSMEMSS DIYAHWRFTE QSLPNDLIKR GMASRDPKAR
601: GGVSLHIEDY PYAVDGIDVW LAIEGWVRSY CDHFYHADAA VAGDAELQAW WDDVRRVGHG DRQGDAACWL DLDTVAGLVE TLSTLIWTAS ALHAAVNFGQ
701: YGYAGYPPNR PTRCRRFVPL PGSPEMAQLE ADPGRFFLET VPDRFTATLG IALIEVLSNH TSDEVYLGQR ATSTWTDDGE VLLLLDRFRD ELRRVEKRVE
801: ERNKDPRLVN RRGPVRVPYT LLYPDAGDVA GKEKGITGRG IPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.