Factsheet for Solyc09g055900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074322	Potato	cytosol	93.07	97.29
Solyc01g009680.2.1	Tomato	plastid	43.07	44.92
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	39.18	35.42
GSMUA_Achr2P05850_001	Banana	cytosol	60.17	33.78
KRH66214	Soybean	cytosol	63.2	33.72
KRH07345	Soybean	cytosol, plastid	62.12	33.33
TraesCS1D01G215800.2	Wheat	cytosol	56.28	30.73
Os05t0304600-01	Rice	plastid	56.28	30.7
TraesCS1B01G226400.1	Wheat	cytosol	56.06	30.69
TraesCS1A01G212900.1	Wheat	cytosol	56.06	30.69
HORVU1Hr1G054390.4	Barley	cytosol	55.41	30.33
KXG24148	Sorghum	cytosol	54.98	29.64
Zm00001d041204_P001	Maize	cytosol	53.25	28.94
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	37.66	27.27
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	50.0	26.86
Solyc09g075860.2.1	Tomato	cytosol, nucleus	50.43	26.57
Solyc01g099200.2.1	Tomato	cytosol, plastid	48.27	26.52
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	48.92	26.34
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	49.13	26.33
Solyc01g099210.2.1	Tomato	cytosol	49.13	26.3
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	48.48	26.02
Solyc01g099180.2.1	Tomato	cytosol	47.62	25.76
Solyc09g075870.1.1	Tomato	cytosol	47.19	25.53
Solyc01g006540.2.1	Tomato	plastid	44.37	22.88
Solyc12g011040.1.1	Tomato	nucleus, plastid	44.16	22.87
Solyc03g122340.2.1	Tomato	cytosol	44.81	22.8
Solyc01g006560.2.1	Tomato	plastid	44.16	22.62
Solyc05g014790.2.1	Tomato	plastid	44.37	22.5
Solyc01g099150.2.1	Tomato	nucleus	39.39	21.11
KXG23911	Sorghum	cytosol, plastid	20.35	17.25
VIT_07s0289g00010.t01	Wine grape	cytosol	16.23	15.72
PGSC0003DMT400074324	Potato	cytosol	2.16	2.89
Solyc09g055890.2.1	Tomato	cytosol	1.95	2.43

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR013819	UniProt:K4CT85	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_plant	PFAM:PF00305	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF59	SUPFAM:SSF48484	EnsemblPlantsGene:Solyc09g055900.2	EnsemblPlants:Solyc09g055900.2.1	UniParc:UPI000276B155
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4CT85]

Coordinates

chr9:+:46067294..46070439

Molecular Weight (calculated)

53229.8 Da

IEP (calculated)

7.714

GRAVY (calculated)

-0.389

Length

462 amino acids

Sequence
(BLAST)

001: MDRKGNTTLN NYRRLFHQEA MNQWRIFILD HHNYLMPFLG KINKNGVCAY ASRTLLFLKD DDTLKPLAIE LSLPGLSRGT EIQRVFRPGG NGSEAALWQF
101: AKAHVGVNDS GYHQLISHWL KTHAVVEPFI IATRRQLSVM HPIHRLLDPH FKDTMHINAL ARSTVLKGGG IIEKTLYSGE VSMELSSSLY KDWRFDEQSL
201: PGDLLKRGMA FHNPDCLAGV QLLFEDYPYG RDGLEIWVAT KRWVNDYCLH FYKDDNSLRF DHEIQEWWSE IKKIGHGDKC NETWWYPMTT LSDLVEALTT
301: LIWISSGLHA SVNFGQYEYV GHPLNRPIKC RNFIPMEGTK EFAEFLHDPD KFFLKMLPNS SETTLYMALL EVLSAPTSDE VYLGQQQSPN WIDDVWVKQR
401: FQQFAEELNK VDKRIVERNA DPKLKNRRGP SNIPYKLLRP AVSNVKSCQG ITAIGIPNSI SM

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.