Factsheet for Solyc01g006540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 15347800

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

gfp PMID: 15347800 doi

G Chen, R Hackett, D Walker, A Taylor, Z Lin, D Grierson

Biotechnology and Biological Sciences Research Council Research Group in Plant Gene Regulation, Plant Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD, United Kingdom.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g090580.2.1
Solyc10g080660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Solyc10g080660.1.1	AT5G18110.1	11117257
AT3G45140.1	Solyc09g090580.2.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081909	Potato	plastid	93.08	92.77
Solyc01g009680.2.1	Tomato	plastid	41.96	84.88
Solyc01g006560.2.1	Tomato	plastid	78.91	78.38
Solyc12g011040.1.1	Tomato	nucleus, plastid	78.01	78.36
CDY72550	Canola	cytosol	24.44	68.22
Os12t0559934-00	Rice	cytosol	14.73	67.69
VIT_06s0004g01500.t01	Wine grape	cytosol	59.04	66.88
CDY61034	Canola	cytosol	33.15	66.44
CDY07409	Canola	cytosol	28.68	66.41
HORVU3Hr1G047210.1	Barley	cytosol	15.74	64.98
VIT_06s0004g01480.t01	Wine grape	cytosol	57.37	64.82
VIT_06s0004g01510.t01	Wine grape	plastid	64.73	64.37
KRH29669	Soybean	plastid	63.95	63.6
VIT_06s0004g01460.t01	Wine grape	plastid	42.19	63.21
CDY70843	Canola	cytosol	8.82	62.7
KRH29668	Soybean	nucleus	62.39	61.7
VIT_06s0004g01470.t01	Wine grape	cytosol	61.94	61.46
KRH24671	Soybean	cytosol, plastid	62.5	61.27
CDY61881	Canola	cytosol	24.22	61.13
KRG89883	Soybean	cytosol, plastid	57.81	60.3
KRG89889	Soybean	cytosol, plastid	56.36	58.72
GSMUA_Achr3P11780_001	Banana	plastid	55.25	58.51
KRG89888	Soybean	nucleus	58.04	57.59
GSMUA_Achr9P12470_001	Banana	plastid	53.68	57.06
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	54.24	56.58
KRH18682	Soybean	cytosol, mitochondrion	57.48	56.53
KRH17965	Soybean	plastid	57.37	55.99
AT3G45140.1	Thale cress	plastid	55.92	55.92
Zm00001d053675_P001	Maize	plastid	56.36	55.8
CDY04196	Canola	plastid	54.91	55.34
CDX79416	Canola	plastid	55.58	55.09
CDX67920	Canola	plastid	55.36	54.87
Bra004057.1-P	Field mustard	cytosol	54.46	54.77
Bra003526.1-P	Field mustard	plastid	55.25	54.76
KXG29701	Sorghum	plastid	56.03	54.74
CDX91565	Canola	plastid	54.8	54.56
OQU80925	Sorghum	cytosol	52.57	54.45
Bra004059.1-P	Field mustard	plastid	52.46	54.27
HORVU6Hr1G033600.1	Barley	plastid	54.24	54.24
Zm00001d015852_P004	Maize	plastid	55.02	54.12
TraesCS6B01G193400.1	Wheat	plastid	54.13	53.83
TraesCS6A01G166000.1	Wheat	golgi	53.91	53.61
TraesCS6D01G154600.1	Wheat	plastid	53.79	53.5
CDY61036	Canola	plastid	53.01	53.43
HORVU7Hr1G050680.1	Barley	peroxisome	40.74	53.36
CDY16339	Canola	plastid	45.2	53.22
Bra004060.1-P	Field mustard	plastid	53.35	53.17
Os02t0194700-01	Rice	plasma membrane	54.69	52.92
Bra022535.1-P	Field mustard	plastid	47.54	52.53
TraesCS4D01G347300.1	Wheat	cytosol	51.34	51.98
TraesCS7D01G029400.1	Wheat	cytosol	15.29	51.7
Os08t0508800-01	Rice	nucleus, plasma membrane	53.12	51.52
TraesCS7A01G246200.1	Wheat	plastid	53.46	51.45
TraesCS7B01G145200.1	Wheat	plastid	53.24	51.4
TraesCS7D01G244800.1	Wheat	plastid	53.46	51.39
TraesCS6B01G014400.1	Wheat	cytosol	34.04	50.75
Os08t0509100-01	Rice	nucleus	53.12	50.58
Zm00001d031449_P001	Maize	mitochondrion	52.79	49.48
HORVU5Hr1G001180.1	Barley	plastid	51.0	49.09
TraesCS5D01G013400.1	Wheat	plastid	50.78	49.03
TraesCS5B01G006500.1	Wheat	plastid	50.78	49.03
TraesCS5A01G007900.1	Wheat	plastid	50.67	48.92
TraesCS7A01G034900.1	Wheat	mitochondrion	15.62	47.78
Solyc05g014790.2.1	Tomato	plastid	47.43	46.65
HORVU7Hr1G006320.4	Barley	plastid	48.21	46.6
HORVU6Hr1G000510.1	Barley	plastid	48.21	46.35
CDY61880	Canola	plastid	28.35	46.1
Os12t0559200-01	Rice	plastid	47.43	46.1
Bra004058.1-P	Field mustard	plastid	54.13	45.84
TraesCS6D01G010100.1	Wheat	plastid	47.88	45.69
TraesCS5D01G041100.1	Wheat	plastid	47.32	44.87
TraesCS5B01G033000.1	Wheat	plastid	47.54	44.84
CDY07407	Canola	cytosol, plastid	54.8	44.76
Solyc03g122340.2.1	Tomato	cytosol	45.09	44.49
Solyc09g055900.2.1	Tomato	cytosol	22.88	44.37
CDY70245	Canola	plastid	21.99	43.01
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	40.74	42.44
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	40.74	42.39
Solyc01g099200.2.1	Tomato	cytosol, plastid	39.73	42.33
Solyc01g099210.2.1	Tomato	cytosol	40.74	42.29
CDY07408	Canola	plastid	21.43	41.92
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	39.84	41.42
Os12t0560200-00	Rice	cytosol	4.58	41.41
Solyc09g075870.1.1	Tomato	cytosol	39.29	41.22
TraesCS5A01G032800.1	Wheat	mitochondrion	39.29	40.98
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	38.84	40.56
Solyc01g099180.2.1	Tomato	cytosol	38.62	40.52
CDY70606	Canola	plastid	17.75	40.25
Solyc09g075860.2.1	Tomato	cytosol, nucleus	39.29	40.14
CDY61882	Canola	plastid	17.08	39.53
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	19.42	34.05
Solyc01g099150.2.1	Tomato	nucleus	30.69	31.9
Solyc09g055890.2.1	Tomato	cytosol	11.5	27.76

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010597	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	UniProt:K4ASM0	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	EnsemblPlantsGene:Solyc01g006540.2	EnsemblPlants:Solyc01g006540.2.1	UniParc:UPI00027622DC	SEG:seg	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4ASM0]

Coordinates

chr1:+:1113718..1123928

Molecular Weight (calculated)

101812.0 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.379

Length

896 amino acids

Sequence
(BLAST)

001: MLKPQFQQST KTLIPSWNTN TLFLASFPIN ILNKNFILKK KNNFRVHHNY NGANTIKAVL NSTQKSIGVK AVVTVQKQVN LNLLRGLDGI GDLLGKSLIL
101: WIVAAELDHK TGLEKPSIRS YAHRGLDVDG DTYYEAVFEI PEDFGEVGAI LVENEHHKEM YVKNIVIDGF VHGKVEITCN SWVHSKFANP DKRIFFTNKS
201: YLPSQTPSGV IRLREEELVT LRGDGVGERK VFERIYDYDV YNDLGEVDSN NDDAKRPILG GKKLPYPRRC RTGRQRSKKD PLYETRSTFV YVPRDEAFSA
301: VKSLTFSGNT VYSALHAVVP ALESVVSDPD LGFPHFPAID SLFNVGVDLS GLSDKKSSLF NIVPRLIKSI SETGKDVLLF ESPQLVQRDK FSWFRDVEFA
401: RQTLAGLNPY SIRLVTEWPL RSNLDPKVYG PPESEITKEL IENEIGNNMT VEQAVQQKKL FILDYHDLLL PYVNKVNELK GSVLYGSRTI FFLTPHGTLK
501: PLAIELTRPP IDDKPQWKEV YSPNNWNATG AWLWKLAKAH VLSHDSGYHQ LVSHWLRTHC CTEPYIIATN RQLSAMHPIY RLLHPHFRYT MEINALAREA
601: LINANGIIES SFFPGKYSVE LSSIAYGAEW RFDQEALPQN LISRGLAEED PNEPHGLKLA IEDYPFANDG LVLWDILKQW VTNYVNHYYP QTNLIESDKE
701: LQAWWSEIKN VGHGDKKDEP WWPELKTPND LIGIITTIVW VTSGHHAAVN FGQYSYGGYF PNRPTTARSK MPTEDPTAEE WEWFLNKPEE ALLRCFPSQI
801: QATKVMTILD VLSNHSPDEE YIGEKIEPYW AEDPVINAAF EVFSGKLKEL EGIIDARNND SKLNNRNGAG VMPYELLKPY SEPGVTGKGV PYSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.