Factsheet for HORVU5Hr1G001180.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU2Hr1G094490.1
HORVU4Hr1G061500.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	HORVU2Hr1G094490.1	AT5G18110.1	11117257
AT3G45140.1	HORVU4Hr1G061500.4	AT5G18110.1	11117257
AT3G45140.1	HORVU1Hr1G039260.2	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G007900.1	Wheat	plastid	94.2	94.5
TraesCS5D01G013400.1	Wheat	plastid	94.09	94.4
TraesCS5B01G006500.1	Wheat	plastid	93.77	94.07
TraesCS7D01G029400.1	Wheat	cytosol	25.46	89.43
Os12t0559934-00	Rice	cytosol	16.65	79.49
HORVU3Hr1G047210.1	Barley	cytosol	17.08	73.27
HORVU6Hr1G000510.1	Barley	plastid	73.25	73.18
HORVU7Hr1G006320.4	Barley	plastid	66.81	67.1
Solyc01g009680.2.1	Tomato	plastid	29.54	62.08
VIT_13s0064g01490.t01	Wine grape	cytosol	25.99	60.65
CDY61034	Canola	cytosol	28.89	60.18
Os12t0559200-01	Rice	plastid	59.51	60.09
CDY07409	Canola	cytosol	23.95	57.62
VIT_06s0004g01500.t01	Wine grape	cytosol	47.91	56.38
VIT_13s0064g01500.t01	Wine grape	cytosol	15.04	56.0
Os12t0560200-00	Rice	cytosol	5.91	55.56
CDY72550	Canola	cytosol	19.12	55.45
PGSC0003DMT400020118	Potato	cytosol	41.14	55.27
VIT_06s0004g01480.t01	Wine grape	cytosol	47.05	55.23
VIT_06s0004g01460.t01	Wine grape	plastid	35.12	54.68
HORVU6Hr1G033600.1	Barley	plastid	51.45	53.46
VIT_13s0064g01480.t01	Wine grape	plastid	50.81	52.38
HORVU7Hr1G050680.1	Barley	peroxisome	38.24	52.05
PGSC0003DMT400081909	Potato	plastid	49.73	51.5
VIT_06s0004g01510.t01	Wine grape	plastid	49.73	51.39
Solyc01g006560.2.1	Tomato	plastid	49.62	51.22
VIT_06s0004g01470.t01	Wine grape	cytosol	49.52	51.05
Solyc01g006540.2.1	Tomato	plastid	49.09	51.0
KRH29669	Soybean	plastid	49.3	50.94
CDY61881	Canola	cytosol	19.33	50.7
KRH24671	Soybean	cytosol, plastid	49.73	50.66
KRH29668	Soybean	nucleus	49.09	50.44
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.08	49.94
KRG89883	Soybean	cytosol, plastid	45.86	49.71
KRG89889	Soybean	cytosol, plastid	45.22	48.95
Solyc12g011040.1.1	Tomato	nucleus, plastid	46.4	48.43
CDX79416	Canola	plastid	46.72	48.12
CDX67920	Canola	plastid	46.72	48.12
CDX91565	Canola	plastid	46.51	48.11
Bra003526.1-P	Field mustard	plastid	46.62	48.01
KRG89888	Soybean	nucleus	46.4	47.84
CDY04196	Canola	plastid	45.65	47.81
AT3G45140.1	Thale cress	plastid	45.86	47.66
KRH17965	Soybean	plastid	46.94	47.6
HORVU5Hr1G055110.2	Barley	mitochondrion	18.05	47.59
CDY16339	Canola	plastid	38.88	47.57
KRH18682	Soybean	cytosol, mitochondrion	46.19	47.2
Bra004057.1-P	Field mustard	cytosol	45.01	47.03
Bra004059.1-P	Field mustard	plastid	43.61	46.88
Bra004060.1-P	Field mustard	plastid	45.01	46.61
CDY61036	Canola	plastid	44.15	46.23
Bra022535.1-P	Field mustard	plastid	39.42	45.25
CDY70843	Canola	cytosol	6.12	45.24
CDY61880	Canola	plastid	24.49	41.38
HORVU4Hr1G076570.6	Barley	cytosol, plastid	40.39	41.05
HORVU1Hr1G054390.4	Barley	cytosol	35.98	39.69
HORVU5Hr1G093770.1	Barley	cytosol	36.63	39.51
Bra004058.1-P	Field mustard	plastid	44.79	39.41
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	36.73	38.95
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	35.98	38.77
CDY07407	Canola	cytosol, plastid	45.44	38.56
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	19.87	37.91
HORVU5Hr1G117110.1	Barley	cytosol	35.23	36.98
CDY70245	Canola	plastid	17.94	36.46
HORVU2Hr1G115980.2	Barley	plastid	32.98	34.81
CDY07408	Canola	plastid	16.97	34.5
HORVU2Hr1G115960.1	Barley	plastid	33.3	33.51
CDY70606	Canola	plastid	13.86	32.66
CDY61882	Canola	plastid	13.43	32.3

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009719	GO:GO:0009753	GO:GO:0009987
GO:GO:0016165	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	EnsemblPlantsGene:HORVU5Hr1G001180	EnsemblPlants:HORVU5Hr1G001180.1	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	UniProt:M0Y1R9	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002948202
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:M0Y1R9]

Coordinates

chrchr5H:+:3924122..3928957

Molecular Weight (calculated)

105385.0 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.529

Length

931 amino acids

Sequence
(BLAST)

001: MLTATKPLVG GACAAPSSSA RRRTFVVPEA RRKPGNGRRT SVSKVGSTST STTTTTTTTL SADSNGAAVG TVTRPDVHVQ DRTHATEMKA TVTVHMSKAA
101: GVRDFLYDLI LKTWLHVDLV SSELDPQTGQ EREPISGAVK HSGRVDDEWD MYEATFKVPA SFGPIGAVQV TNYHHSEMLL GDIEVFPTGQ EESAVTFHCK
201: SWIDPSHCTP DKRVFFPAHS YLPSQTPKGV EGLRKRELEI LRGTGCGERK EHDRIYDYDV YNDLGNPDDD NNPTTRPVLG GKEHPYPRRC RTGRPRSKKD
301: PFSEERSHKE HIYVPRDEAF TERKMGAFDT KKFMSQLHAL TTGLKTAKHK SQSFPSLSAI DQLYDDNFRN QPVQPEGGKL RFVIDLLETE LLHLFKLEGA
401: AFLEGIRRVF KFETPEIHDR DKFAWFRDEE FARQTIAGMN PMSIQLVTEF PIKSNLDEAT YGPADSLITK EVVEEQIRRV MTADEAVQNK KLFMLDYHDL
501: LLPYVHKVRK LDGTTLYGSR ALFFLTADGT LRPIAIELTR PKSKKKPQWR QVFTPGCDGS VTGSWLWQLA KAHILAHDAG VHQLVSHWLR THACTEPYII
601: AANRQLSQMH PVYRLLHPHF RFTMEINAQA RAMLINAGGI IEGSFVPGEY SLELSSVAYD QQWRFDMEAL PEDLIRRGMA VRNPNGELEL AIEDYPYAND
701: GLLVWDAIKQ WALTYVQHYY PCAADIVDDE ELQAWWTEVR TKGHADKQDE PWWPELDSHE NLAQTLATIM WVTSGHHAAV NFGQYPMAGY IPNRPTMARR
801: NMPTEIGGDD MRDFVEAPEK VLLDTFPSQY QSAIVLAILD LLSTHSSDEE YMGTHEEPAW TKDGVINQAF EEFKESTRKI VEQVDEWNND PDRKNRHGAG
901: MVPYVLLRPS DGDPTDEKMV MEMGIPNSIS I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.