Factsheet for Bra022535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002134.1-P
Bra006439.1-P
Bra023664.1-P
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Bra002134.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra006439.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra023664.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra035393.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra035531.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra039484.1-P	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16339	Canola	plastid	82.0	87.39
Bra003526.1-P	Field mustard	plastid	85.08	76.33
AT3G45140.1	Thale cress	plastid	77.56	70.2
Bra004057.1-P	Field mustard	cytosol	76.94	70.03
Bra004059.1-P	Field mustard	plastid	74.6	69.86
Bra004060.1-P	Field mustard	plastid	76.94	69.41
VIT_13s0064g01500.t01	Wine grape	cytosol	20.84	67.6
Bra004058.1-P	Field mustard	plastid	77.19	59.17
PGSC0003DMT400020118	Potato	cytosol	43.9	51.37
Solyc01g009680.2.1	Tomato	plastid	27.99	51.24
TraesCS7D01G029400.1	Wheat	cytosol	16.65	50.94
VIT_13s0064g01480.t01	Wine grape	plastid	55.49	49.83
KRH29669	Soybean	plastid	54.5	49.06
Solyc01g006560.2.1	Tomato	plastid	53.88	48.45
TraesCS7A01G034900.1	Wheat	mitochondrion	17.39	48.12
PGSC0003DMT400081909	Potato	plastid	52.9	47.72
Solyc01g006540.2.1	Tomato	plastid	52.53	47.54
KRG89883	Soybean	cytosol, plastid	50.06	47.26
KRH29668	Soybean	nucleus	52.65	47.13
KRH24671	Soybean	cytosol, plastid	53.02	47.05
VIT_13s0064g01490.t01	Wine grape	cytosol	22.81	46.37
Solyc12g011040.1.1	Tomato	nucleus, plastid	50.92	46.3
KRH17965	Soybean	plastid	51.66	45.64
Os12t0560200-00	Rice	cytosol	5.55	45.45
GSMUA_Achr9P12470_001	Banana	plastid	47.23	45.43
KRG89889	Soybean	cytosol, plastid	47.72	45.0
OQU80925	Sorghum	cytosol	47.84	44.86
GSMUA_Achr3P11780_001	Banana	plastid	46.49	44.56
Zm00001d053675_P001	Maize	plastid	49.69	44.53
Zm00001d015852_P004	Maize	plastid	49.94	44.46
KRG89888	Soybean	nucleus	49.32	44.3
KRH18682	Soybean	cytosol, mitochondrion	49.2	43.8
KXG29701	Sorghum	plastid	49.32	43.62
Os08t0508800-01	Rice	nucleus, plasma membrane	49.57	43.51
Os02t0194700-01	Rice	plasma membrane	49.45	43.3
Os08t0509100-01	Rice	nucleus	50.19	43.25
HORVU6Hr1G033600.1	Barley	plastid	47.72	43.19
TraesCS4D01G347300.1	Wheat	cytosol	46.86	42.94
TraesCS6A01G166000.1	Wheat	golgi	47.47	42.73
TraesCS6B01G193400.1	Wheat	plastid	47.47	42.73
TraesCS6D01G154600.1	Wheat	plastid	47.35	42.62
HORVU7Hr1G050680.1	Barley	peroxisome	35.27	41.81
TraesCS7B01G145200.1	Wheat	plastid	47.84	41.81
TraesCS7A01G246200.1	Wheat	plastid	47.84	41.68
TraesCS7D01G244800.1	Wheat	plastid	47.84	41.63
Zm00001d031449_P001	Maize	mitochondrion	48.58	41.21
TraesCS5A01G007900.1	Wheat	plastid	45.5	39.76
TraesCS5D01G013400.1	Wheat	plastid	45.5	39.76
TraesCS5B01G006500.1	Wheat	plastid	45.38	39.66
HORVU5Hr1G001180.1	Barley	plastid	45.25	39.42
TraesCS6B01G014400.1	Wheat	cytosol	28.98	39.1
Os12t0559200-01	Rice	plastid	43.9	38.61
HORVU7Hr1G006320.4	Barley	plastid	44.02	38.51
Os12t0559934-00	Rice	cytosol	9.25	38.46
Bra021322.1-P	Field mustard	cytosol	40.07	37.92
HORVU6Hr1G000510.1	Barley	plastid	43.53	37.88
HORVU3Hr1G047210.1	Barley	cytosol	10.11	37.79
TraesCS5D01G041100.1	Wheat	plastid	43.53	37.35
TraesCS6D01G010100.1	Wheat	plastid	42.91	37.06
TraesCS5B01G033000.1	Wheat	plastid	43.16	36.84
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	41.18	36.34
Bra008037.1-P	Field mustard	plastid	40.94	36.13
Bra016602.1-P	Field mustard	cytosol	40.44	35.69
Bra033991.1-P	Field mustard	plastid	38.96	34.61
Bra004081.1-P	Field mustard	plastid	39.09	34.53
Bra039948.1-P	Field mustard	cytosol	37.11	33.93
Bra023829.1-P	Field mustard	cytosol	37.73	33.89
TraesCS5A01G032800.1	Wheat	mitochondrion	33.91	32.01

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
EnsemblPlantsGene:Bra022535	EnsemblPlants:Bra022535.1	EnsemblPlants:Bra022535.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_C_sf	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4E187	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00468	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002545579
SEG:seg	:	:	:	:	:

Description

AT3G45140 (E=6e-226) LOX2, ATLOX2 | LOX2 (LIPOXYGENASE 2); lipoxygenase

Coordinates

chrA02:+:9189174..9192803

Molecular Weight (calculated)

92542.2 Da

IEP (calculated)

5.255

GRAVY (calculated)

-0.456

Length

811 amino acids

Sequence
(BLAST)

001: MFCKESPSLQ TLSTAQSLSS LFPKPSALIN PILTGRRDKP CRRQNFRGRC RITASQFNIA QKGKLLKEKV KRIKVKGFIT AEEGLLESLS WLRPLDVITD
101: IRGRSLLVEL ISAETDTRTV MEEGPVEDYA QRVWFESRNE KYECVFDMPE DFGTVGAIRV QNQHRREMFI KEMKLELPSG SVTFTCNSWV TPKSIDPTKR
201: IFFSNKSYLP SATPEPLKKL RKEELETLQG NNRERVGEFA KYERVYDYDV YNDVGDPDKD ERLARPVMGG LSHPYPRRCK TGRKPCEKDA SSEKREGEFY
301: VPRDEEFSST KGTAFTGKAI LAALPSVFPQ IEAALLDPNL PFPHFKSIED LYEVGIDIPK DAGLLPMIPK LIKVVAEAQD NLLQFDPPIL LNKDRFSWIR
401: DDEFARQTLA GLNPYCIQLV TEWPLKSKLD PAVYGDPKSL ITWDIVEKEI RGVMSVDEAL KNKRLFMLDY HDLLLPYVNK VRELDDTTLY ASRTLFFLSD
501: DSTLRPVAIE LTRPPDVNRP QWSQVFTPGY DATSCWLWNL AKTHAVAHDA GYHQLISHWG LAVEDETAEH GLRLTIPDYP FANDGLMLWD ALKEWITESV
601: KHYYPDAALI TCDEELQAWW SEVRNIGHGD KKDEPWWPVL RTQDDLIGVV TTIAWVASGH HAAVNFGQYG YGGYFPNRPT TTRIRMPVEE PTEEELKEFY
701: EEPEKVLLKT FPSQKQATQV MGTLDLLSTH SPDEEYLGEE PEASWVDDPV IFAAYERFKG RLKHLEDVID ERNVNVSLKN RAGAGVVKYE LLKPISQPGV
801: TGMGVPYSVS I

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.