Factsheet for TraesCS7A01G246200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G244800.1	Wheat	plastid	97.85	97.75
TraesCS7B01G145200.1	Wheat	plastid	96.78	97.09
HORVU7Hr1G050680.1	Barley	peroxisome	64.45	87.72
OQU80925	Sorghum	cytosol	73.9	79.54
Os08t0509100-01	Rice	nucleus	75.83	75.03
Os08t0508800-01	Rice	nucleus, plasma membrane	74.44	75.0
Zm00001d031449_P001	Maize	mitochondrion	76.37	74.37
VIT_13s0064g01500.t01	Wine grape	cytosol	18.26	68.0
GSMUA_Achr9P12470_001	Banana	plastid	55.85	61.68
CDY61034	Canola	cytosol	29.11	60.63
VIT_13s0064g01490.t01	Wine grape	cytosol	25.67	59.9
Solyc01g009680.2.1	Tomato	plastid	28.46	59.82
CDY72550	Canola	cytosol	20.62	59.81
VIT_06s0004g01500.t01	Wine grape	cytosol	50.27	59.17
CDY07409	Canola	cytosol	24.49	58.91
VIT_06s0004g01480.t01	Wine grape	cytosol	48.98	57.5
VIT_13s0064g01480.t01	Wine grape	plastid	55.21	56.92
PGSC0003DMT400020118	Potato	cytosol	42.21	56.71
VIT_06s0004g01460.t01	Wine grape	plastid	35.66	55.52
VIT_06s0004g01470.t01	Wine grape	cytosol	52.85	54.49
KRH29668	Soybean	nucleus	52.85	54.3
KRH29669	Soybean	plastid	52.42	54.16
CDY61881	Canola	cytosol	20.62	54.08
KRG89889	Soybean	cytosol, plastid	49.95	54.07
KRH24671	Soybean	cytosol, plastid	53.06	54.05
KRG89883	Soybean	cytosol, plastid	49.73	53.9
PGSC0003DMT400081909	Potato	plastid	51.99	53.84
VIT_06s0004g01510.t01	Wine grape	plastid	51.77	53.5
Solyc01g006540.2.1	Tomato	plastid	51.45	53.46
CDY70843	Canola	cytosol	7.2	53.17
Solyc01g006560.2.1	Tomato	plastid	51.13	52.77
KRG89888	Soybean	nucleus	50.59	52.16
TraesCS6A01G166000.1	Wheat	golgi	50.27	51.94
KRH17965	Soybean	plastid	51.13	51.85
KRH18682	Soybean	cytosol, mitochondrion	50.38	51.48
Solyc12g011040.1.1	Tomato	nucleus, plastid	49.19	51.35
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.51	50.41
TraesCS7A01G034900.1	Wheat	mitochondrion	15.79	50.17
AT3G45140.1	Thale cress	plastid	48.12	50.0
CDX91565	Canola	plastid	48.01	49.67
CDY04196	Canola	plastid	47.37	49.61
Bra004059.1-P	Field mustard	plastid	45.76	49.19
CDY16339	Canola	plastid	39.96	48.88
Bra004057.1-P	Field mustard	cytosol	46.72	48.82
CDX67920	Canola	plastid	47.37	48.78
CDX79416	Canola	plastid	47.37	48.78
Bra003526.1-P	Field mustard	plastid	47.26	48.67
Bra004060.1-P	Field mustard	plastid	46.94	48.61
CDY61036	Canola	plastid	46.4	48.59
Bra022535.1-P	Field mustard	plastid	41.68	47.84
TraesCS5A01G007900.1	Wheat	plastid	47.58	47.74
TraesCS4A01G275800.1	Wheat	cytosol	11.6	45.19
TraesCS4A01G359800.1	Wheat	cytosol	24.81	43.5
CDY61880	Canola	plastid	25.13	42.47
TraesCS2A01G315100.2	Wheat	plastid	42.53	42.13
TraesCS4A01G009400.1	Wheat	plastid	41.68	42.04
TraesCS5A01G378800.2	Wheat	cytosol	35.12	42.03
Bra004058.1-P	Field mustard	plastid	47.05	41.4
TraesCS5A01G032800.1	Wheat	mitochondrion	37.92	41.09
TraesCS1A01G212900.1	Wheat	cytosol	36.52	40.28
CDY07407	Canola	cytosol, plastid	47.37	40.2
TraesCS5A01G378900.1	Wheat	cytosol	36.84	39.7
CDY07408	Canola	plastid	19.33	39.3
TraesCS5A01G378700.1	Wheat	cytosol	36.41	39.24
TraesCS4A01G275900.1	Wheat	cytosol, unclear	36.84	39.07
CDY70245	Canola	plastid	19.12	38.86
CDY70606	Canola	plastid	16.22	38.23
TraesCS5A01G379000.1	Wheat	nucleus, unclear	30.93	37.4
TraesCS6A01G132500.1	Wheat	mitochondrion	34.8	37.11
TraesCS6A01G132200.1	Wheat	mitochondrion	34.8	37.11
CDY61882	Canola	plastid	14.82	35.66
TraesCS2A01G525500.1	Wheat	plastid	32.98	33.12

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF66	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS7A01G246200
EnsemblPlants:TraesCS7A01G246200.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:+:225055337..225060057

Molecular Weight (calculated)

102365.0 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.322

Length

931 amino acids

Sequence
(BLAST)

001: MSLPPQLKPS SLQSHHRTIA SRRILPSSTC STSSSLPSSS LSAGRPGRRC ARALGGGRQL VVRCASVGPS EVVPASSSIG GGGASSDMAG KGGASVRVKA
101: VATVKVTVGG FLDGLRPSRT MDDVKDLIGR SMELELVSAE LDAKTGKEKP TIKSYAHKVA DNDLHVVTYE ADFNVPAGFG PVGAVLVANE HGTEMFLEDV
201: KVVTAGGNSD VIRCDSWLPP KSGDAKRVFF ANKPYLPGQT PPGLQGYRKN DLAKKRGDGT GQRKATDRVY DYDVYNDLGS GEELGAAGAR PVLGGNKQFP
301: YPRRCRTGRP RSTKDPQSET RSGDVYVPRD EAFSEEKNVQ FSVKTLQSVL HAAVPAVQST LIDPNQGFPS FFVIDKLFED GVELPRAEDL GFLRAAVPRL
401: LEFLRDGPGD KVLLFDAPAN VQKDKFAWLR DEEFARETLA GINPYAIELV KEFPLKSKLD PAVYGPAESA ITAELLEAQM GHTMTVAEAV KSKRLFMLDF
501: HDLFLPYVHK IRALQHTTMY GSRTIMFLTD DGTLRLLAIE LTRPASPTMP QWRQVFTSST DTTKSWLWRM AKSHVRAHDA GHHELVTHWL RTHCAVEPYI
601: LAANRQLSEM HPIYQLLRPH FRYTMRINAL ARSALINGGG IIELTFSPQR YAMELSSVAY DKLWRFDMEA LPADLVRRGM AEEDPTAEHG LKLAIKDYPF
701: ANDGLLIWDA IKGWVQAYVS SYYPNNASVT GDAELQAFWT EVRTEGHGDK KDAPWWPKLD TPESLAHTLT TIIWVAAAHH AAVNFGQYDF GGYFPNRPSI
801: ARTNMPVEEP VDAAAFEKFL DNPDQALREC FPSQVQATLV MAVLDVLSSH SPDEEYLGGM ETAPWGYDTA VQAAYLRFNE QLKAVEGIID GRNKNRKLKN
901: RCGAGIVPYQ LMKPFSQPGV TGKGIPNSTS I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.