Factsheet for TraesCS2A01G315100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G313400.1	Wheat	plastid	94.79	97.91
TraesCS2B01G333600.1	Wheat	plastid	94.79	97.16
Os04t0447100-01	Rice	cytosol	76.17	89.95
EES10882	Sorghum	plastid	84.15	85.61
Zm00001d003533_P001	Maize	plastid	83.09	83.0
Zm00001d025524_P001	Maize	plastid	81.06	82.02
GSMUA_Achr3P07870_001	Banana	plastid	66.49	71.1
GSMUA_Achr9P16020_001	Banana	plastid	66.17	71.0
GSMUA_Achr8P22700_001	Banana	plastid	63.94	70.87
VIT_00s0265g00170.t01	Wine grape	cytosol	35.64	66.34
TraesCS4A01G009400.1	Wheat	plastid	61.81	62.95
CDY21750	Canola	cytosol, mitochondrion, plastid	60.21	61.59
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	59.89	61.26
AT1G17420.1	Thale cress	cytosol, plastid	59.79	61.15
CDY64617	Canola	cytosol	59.68	61.04
CDX81825	Canola	cytosol	59.57	60.94
CDX96769	Canola	cytosol	59.47	60.83
Bra016602.1-P	Field mustard	cytosol	59.26	60.61
VIT_09s0002g01080.t01	Wine grape	cytosol	59.36	60.19
Solyc03g122340.2.1	Tomato	cytosol	58.09	60.13
PGSC0003DMT400058933	Potato	plastid	57.77	59.41
AT1G72520.1	Thale cress	plastid	58.19	59.07
CDX82146	Canola	plastid	53.3	58.94
Bra008037.1-P	Field mustard	plastid	57.55	58.87
CDY49853	Canola	plastid	57.45	58.76
KRH06197	Soybean	nucleus	57.45	58.57
KRG97300	Soybean	plastid	55.96	58.51
KRH69027	Soybean	plastid	56.06	58.49
KRH47615	Soybean	nucleus	57.55	58.36
KRH10882	Soybean	cytosol	23.51	50.92
KRH50048	Soybean	cytosol	48.62	50.22
KRH21441	Soybean	cytosol	46.38	47.91
TraesCS4A01G359800.1	Wheat	cytosol	26.49	46.89
TraesCS4A01G275800.1	Wheat	cytosol	11.38	44.77
TraesCS5A01G378800.2	Wheat	cytosol	35.64	43.06
TraesCS6A01G166000.1	Wheat	golgi	40.85	42.62
TraesCS7A01G246200.1	Wheat	plastid	42.13	42.53
TraesCS4A01G275900.1	Wheat	cytosol, unclear	38.94	41.69
TraesCS1A01G212900.1	Wheat	cytosol	37.02	41.23
TraesCS5A01G378700.1	Wheat	cytosol	37.66	40.97
TraesCS5A01G007900.1	Wheat	plastid	40.32	40.84
TraesCS6A01G132200.1	Wheat	mitochondrion	37.13	39.98
TraesCS6A01G132500.1	Wheat	mitochondrion	37.13	39.98
TraesCS5A01G378900.1	Wheat	cytosol	36.7	39.93
TraesCS7A01G034900.1	Wheat	mitochondrion	12.13	38.91
TraesCS5A01G379000.1	Wheat	nucleus, unclear	31.17	38.05
TraesCS2A01G525500.1	Wheat	plastid	34.57	35.06
TraesCS5A01G032800.1	Wheat	mitochondrion	31.49	34.46

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:TraesCS2A01G315100	EnsemblPlants:TraesCS2A01G315100.2	TIGR:cd01751	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:+:540451950..540455732

Molecular Weight (calculated)

105230.0 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.339

Length

940 amino acids

Sequence
(BLAST)

001: MELVGRSLLQ AAGSASTAAP RGGRERGGGG LCFASLGGRQ GRRTVRSKAP VGALAERVVL TPAPAERVAR PEAHPQSVAA RAVVTVRRKR KVEVKEQVAE
101: QMDAYADRVG RSVLLELIST ETDPRKGGPK KSKKSKLVGW FEKRDVKAEL VVYTAEFTVD AAFGEPGAVT VLNRHQLEFF IESILVEGFP SGPAHFTCNS
201: WVQPTRVDPA PRVFFTNRPY LPSKTPPGLR ELRRRELKEL RGSGTGVRKI TDRAYDYDVY NDLGNPDKGE GFERPVLGGD KLPYPRRMRT ARPSTVTDEG
301: AESRVEYPEP IYVSRDEEFE EGKNEMLSEG AIKALLHNFM PLLVSSVSPD SRDFAGFHDV DNLFKEGLRL KQALHDQLFQ KIPFVRKIQE NSEGLLRYDT
401: PDIIKKDKFA WLRDDEFARQ ALAGINPVNI ERLQVFPPVS KLDPAVYGPP ESAITEEHII GNLDGMSVRQ ALEENKLYML DYHDIFMPFL DRINSLDGRK
501: AYGTRTLFFL TAGGTLKPIA IELCLPPMTD DCKRAKRVFT PPADATSIWL WQLAKAHVCS NDAGVHQLIN HWLRTHACME PFIIAAHRQM SAMHPIFKLL
601: KPHMRYTLKI NALARQILIN GDGVIESGFT PGRYCMEMSS FAYDNLWRLD QEGLPADLIR RYLQASLQMA LLLSTVAVAQ KFIWCLVCRR GMAVEDASQP
701: HGLRLLIEDY PYATDGLLLW SAIARWCEAY VAAYYPSDEA VQDDYELQSW YTEAVQVGHP DKRDAPWWPR LTTAGDLASL LTTLVWLCSA QHAALNFGQY
801: PLGGYIPNRP PLMRRLVPAE GDPEYEHLVA DPHRFYLSAL PSLTQTTTFM TVIDTLSTHS ADEQYLGERP NEEWTADPAA LAAAREFAAE VRRAEEEIER
901: RNADPSRRNR CGAGVLPYEL MAPSSGPGIT CRGVPNSVTI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.