CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	CDX89318	AT4G26630.1	25387881
AT1G17420.1	CDX94304	AT4G26630.1	25387881
AT1G17420.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21750	Canola	cytosol, mitochondrion, plastid	97.82	97.82
CDX96769	Canola	cytosol	92.93	92.93
CDY64617	Canola	cytosol	92.93	92.93
AT1G17420.1	Thale cress	cytosol, plastid	92.6	92.6
CDY49853	Canola	plastid	81.83	81.83
CDX82146	Canola	plastid	75.3	81.41
Solyc03g122340.2.1	Tomato	cytosol	71.71	72.58
KRH06197	Soybean	nucleus	72.47	72.23
PGSC0003DMT400058933	Potato	plastid	71.6	71.99
KRH47615	Soybean	nucleus	72.25	71.63
KRH69027	Soybean	plastid	68.66	70.03
KRG97300	Soybean	plastid	68.23	69.74
VIT_09s0002g01080.t01	Wine grape	cytosol	70.19	69.58
HORVU5Hr1G055110.2	Barley	mitochondrion	26.22	68.27
Os04t0447100-01	Rice	cytosol	56.8	65.58
GSMUA_Achr9P16020_001	Banana	plastid	62.24	65.3
GSMUA_Achr3P07870_001	Banana	plastid	62.35	65.19
GSMUA_Achr10P...	Banana	cytosol	62.13	64.89
GSMUA_Achr8P22700_001	Banana	plastid	59.85	64.86
Os03t0179900-01	Rice	plastid	63.87	63.94
EER95400	Sorghum	mitochondrion	63.0	62.66
TraesCS4B01G295200.1	Wheat	plastid	62.13	61.86
TraesCS2B01G333600.1	Wheat	plastid	61.26	61.4
HORVU4Hr1G076570.6	Barley	cytosol, plastid	61.15	61.35
TraesCS4A01G009400.1	Wheat	plastid	61.59	61.32
TraesCS2D01G313400.1	Wheat	plastid	60.72	61.32
TraesCS4D01G294100.1	Wheat	plastid	61.37	61.17
EES10882	Sorghum	plastid	60.28	59.96
TraesCS2A01G315100.2	Wheat	plastid	60.94	59.57
Zm00001d027893_P001	Maize	plastid	62.68	59.5
Zm00001d003533_P001	Maize	plastid	59.85	58.45
Zm00001d025524_P001	Maize	plastid	58.98	58.34
CDY07409	Canola	cytosol	22.09	52.45
CDY61034	Canola	cytosol	25.03	51.45
CDY72550	Canola	cytosol	17.95	51.4
CDY61881	Canola	cytosol	18.93	49.01
CDY12655	Canola	plastid	47.99	48.3
CDY07417	Canola	plastid	48.2	48.26
CDY51606	Canola	plastid	47.88	48.19
CDY70916	Canola	cytosol	26.22	47.82
CDY70843	Canola	cytosol	5.98	43.65
CDY04196	Canola	plastid	42.0	43.42
CDX91565	Canola	plastid	42.44	43.33
CDY16339	Canola	plastid	35.8	43.23
CDX67920	Canola	plastid	42.44	43.14
CDX79416	Canola	plastid	42.33	43.03
CDY38326	Canola	cytosol	40.81	42.28
CDY61036	Canola	plastid	40.81	42.18
CDY46325	Canola	cytosol	40.37	42.06
CDY64191	Canola	cytosol	40.26	40.79
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	47.77	39.2
CDY61880	Canola	plastid	22.31	37.21
CDY07407	Canola	cytosol, plastid	42.11	35.28
CDY70245	Canola	plastid	17.19	34.5
CDY07408	Canola	plastid	16.76	33.62
CDY70606	Canola	plastid	14.25	33.16
CDY61882	Canola	plastid	13.82	32.82
CDY43490	Canola	cytosol, plasma membrane	40.48	30.92

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078CYC1	EnsemblPlants:CDX81825	ProteinID:CDX81825	ProteinID:CDX81825.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00136769001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308
SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382	UniParc:UPI0004EF3D6A	SEG:seg	:

Description

BnaC08g37760D

Coordinates

chrLK031826:+:1005490..1009434

Molecular Weight (calculated)

103693.0 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.444

Length

919 amino acids

Sequence
(BLAST)

001: MALAKELMGY PLTSKRPLLV WSASHFKKRT QPTQFSIKPF DRRPRTSKSG VVAAISEDLV KTLRFNTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDF
101: KETLVKHLDA FGDKIGRNVV LELVSTELDP KTNMPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPGKRIF FTNKPLLPSE TPDGLKKLRE RELKNLRGDG SGARKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEIPY PRRCRTGRHP
301: TDTDKEAESR VEKPLPMYVP RDEQFEETKQ KTFAAGRLKA VLHHLVPSLK ASILAEDFAD FGEIDGLYKE GLLLKLGFQD EIFDKFPLPK AIVNTLQESS
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VRTFPPVSNL DPEIYGPQHS ALTSDHIIGH LDGLSVQQAL EENRLYMLNY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPNH RSKRVVTPPV DATSNWVWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEEGFTAGS YGMEMSAAAY KSSWRFDMEG LPADLIRRGI AVPDPTQPHG VKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDAEWWPELN TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PLYASFISDP EKFYFSAMPS LLQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDGEIV DAFYGFAAEI GRIEKEIEKR NSDPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.