CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004081.1-P	Field mustard	plastid	99.02	99.02
CDY51606	Canola	plastid	90.31	90.8
CDY12655	Canola	plastid	90.31	90.8
AT1G67560.1	Thale cress	plastid	85.62	85.71
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	97.28	79.73
PGSC0003DMT400034472	Potato	cytosol	35.84	73.6
VIT_01s0010g02750.t01	Wine grape	plastid	64.49	64.35
KRH42646	Soybean	plastid	64.38	64.17
Solyc05g014790.2.1	Tomato	plastid	61.76	62.24
PGSC0003DMT400045047	Potato	cytosol, plastid	61.11	61.65
GSMUA_Achr6P28450_001	Banana	plastid	55.66	58.74
CDY72550	Canola	cytosol	18.85	53.89
CDY07409	Canola	cytosol	22.55	53.49
CDY61034	Canola	cytosol	26.03	53.47
CDY70916	Canola	cytosol	28.1	51.19
CDY61881	Canola	cytosol	19.72	50.99
CDY64617	Canola	cytosol	48.8	48.75
CDY21750	Canola	cytosol, mitochondrion, plastid	48.69	48.64
CDX96769	Canola	cytosol	48.69	48.64
CDX81825	Canola	cytosol	48.26	48.2
CDX82146	Canola	plastid	44.01	47.53
CDY49853	Canola	plastid	47.49	47.44
CDY04196	Canola	plastid	41.94	43.31
CDY61036	Canola	plastid	41.5	42.86
CDX79416	Canola	plastid	42.05	42.7
CDX91565	Canola	plastid	41.83	42.67
CDX67920	Canola	plastid	41.94	42.59
CDY16339	Canola	plastid	35.08	42.31
CDY70843	Canola	cytosol	5.66	41.27
CDY46325	Canola	cytosol	37.8	39.34
CDY38326	Canola	cytosol	37.25	38.56
CDY64191	Canola	cytosol	37.47	37.93
CDY61880	Canola	plastid	21.35	35.57
CDY07407	Canola	cytosol, plastid	42.27	35.37
CDY70245	Canola	plastid	16.23	32.53
CDY07408	Canola	plastid	15.8	31.66
CDY70606	Canola	plastid	13.4	31.14
CDY43490	Canola	cytosol, plasma membrane	39.76	30.34
CDY61882	Canola	plastid	12.42	29.46

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078F2W3	UniProt:A0A078F2W3	EnsemblPlants:CDY07417	ProteinID:CDY07417	ProteinID:CDY07417.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00124407001	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniPathway:UPA00382	UniParc:UPI0004EEABCD	SEG:seg	:	:	:

Description

BnaA07g24960DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078F2W3]

Coordinates

chrLK031978:-:604171..609018

Molecular Weight (calculated)

104786.0 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.509

Length

918 amino acids

Sequence
(BLAST)

001: MFIASPVKTN LYGVGLVRSP AFPVHPRRLQ HRVPLSRQVR AVISREEKAV DQEDEKSINR SVVYSSSPAF PWQRSKYTGT KTVMAVVKIR KKMREKLTER
101: LGHQFELLMK AVGQGMLVQL VSEDIDPETG SGRRSLETPV LGLPKARNDP RNLEFTATFT VPTDFGKPGA ILVTNLLSSE ICLSEIIIRD GSDTILFPGN
201: TWIHSRNDNP EGRIIFRSQP CLPSQTPAGI KELREKDLRS VRGNGKGERK PHERIYDYDV YNDLGDPRKK DRVRPILGGP ERPYPRRCRS GRTLVSRDPP
301: CESRGKDKDE FYVPRDEEFE DIKRDTFTAG RLKALFHNLV PSIAAALSNL DIPFTCFSDI DKLYKCDIVL RPTEPKDTGL GGFFGSFVDG ILNVGETLLK
401: YDTPAVIKSD RFAWLRDNEF GRQALAGVNP VNIELLKELP IRSKLDPDMY GPQESALTEE VIAKEVLHYG MTLEQAFEEK RLFLLDYHDM LLPFVDKINS
501: LKEDPRKTYA SRTIFFYSKA GALRPLAIEL SLPPTPDNDN KFVYVHGHDA TTHWMWKLAK AHVCSNDAGV HQLVNHWLRT HASMEPYIIA TNRQLSIMHP
601: VYKLLHPHMR YTLEINARAR KSLINGGGII ESCFTPGKYS MELSSAAYKS MWRFDMEGLP ADLVRRGMAE EDASEECGVK LVIEDYPYAA DGLLIWKAIK
701: NLVESYVKHF YSDPKSIASD FELQAWWDEI KNKGHYDKKD EPWWPKLNTA QDLTEILTNM IWIASGQHAA INFGQYPFGG YVPNRPTLLR KLIPQENDPE
801: YEMFMRNPQY SFLSSLPTQL QATKVMAVQE TLSTHSADEE YLIDLKENQR RWFQDEEVVK YFSKFSEELE EVEKKINKRN KDKKLKNRTG AGMPPYELLL
901: PTSPHGVTGR GIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.