Factsheet for PGSC0003DMT400045047

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034472	Potato	cytosol	48.24	98.21
Solyc05g014790.2.1	Tomato	plastid	96.15	96.05
VIT_01s0010g02750.t01	Wine grape	plastid	73.96	73.15
KRH42646	Soybean	plastid	70.33	69.49
GSMUA_Achr6P28450_001	Banana	plastid	60.88	63.68
CDY51606	Canola	plastid	61.43	61.23
Bra033991.1-P	Field mustard	plastid	61.32	61.12
Bra004081.1-P	Field mustard	plastid	61.65	61.11
CDY07417	Canola	plastid	61.65	61.11
CDY12655	Canola	plastid	61.1	60.9
AT1G67560.1	Thale cress	plastid	60.66	60.2
PGSC0003DMT400058933	Potato	plastid	53.74	53.5
PGSC0003DMT400020118	Potato	cytosol	40.22	52.81
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	61.65	50.09
PGSC0003DMT400063654	Potato	cytosol	26.04	48.27
PGSC0003DMT400081909	Potato	plastid	46.81	47.39
PGSC0003DMT400074322	Potato	cytosol	21.98	45.25
PGSC0003DMT400063469	Potato	cytosol	40.33	43.53
PGSC0003DMT400063446	Potato	cytosol	38.35	43.41
PGSC0003DMT400028158	Potato	cytosol	40.22	42.46
PGSC0003DMT400063477	Potato	cytosol	39.89	42.41
PGSC0003DMT400054145	Potato	cytosol	39.45	41.84
PGSC0003DMT400063461	Potato	cytosol	31.1	40.78
PGSC0003DMT400081370	Potato	cytosol	39.01	40.48
PGSC0003DMT400063452	Potato	cytosol	35.49	40.43
PGSC0003DMT400074324	Potato	cytosol	9.89	26.01

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:102583480	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1BH06	PFAM:PF00305
PFAM:PF01477	EnsemblPlantsGene:PGSC0003DMG400017465	PGSC:PGSC0003DMG400017465	EnsemblPlants:PGSC0003DMT400045047	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000296B36C
RefSeq:XP_006341739.1	RefSeq:XP_015161758.1	SEG:seg	:	:	:

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400017465]

Coordinates

chr5:-:12305546..12312297

Molecular Weight (calculated)

103603.0 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.427

Length

910 amino acids

Sequence
(BLAST)

001: MFIAQSRSTP LSSEIQHVFT IRRRKISQIC RYNKSCCKVK AVIQSGNDNK TVKDANFMEK SMEESNGLLV SSGKGRDVKA VITLRKKIKE KISDKIEDQW
101: ESLMNGIGRG ILIQLISQDI DPVTKSGKFA ESYVRGWLSK PSDHPHIVEY AANFTVPHNF GRPGAIIITN LLDKEIHLVQ IVVHGFNEGP LFFSVNTWIH
201: SQKDNPESRI IFQNQAYLPS QTPPGIKDLR REDLLSIRGN GKGERKLHER IYDYDVYNDL GNPDKSEDLA RPLVGGKEKP YPRRCRTGRG PTKKDPLAEK
301: RIEKPHPVYV PRDETFEEIK QNTFSAGRLK ALLHNLVPLI AATLSSSDIP FTNFTDIDKL YKDGVVLNDD NDPKKNKFLS ETLDKVFSVS KRLLKYEIPA
401: IIRRDRFAWL RDNEFARQAL AGVNPVNIEL LREFPIVSKL DPAVYGPPDS AITRDLIEQE LNGMSVEEAI QDKRLFILDY HDMLLPFIGK MNSLPGRKAY
501: ASRTLFFYTS RGVLKPIVVE LSLPPTPSSP RNKRIFSHGQ DATNHWIWNL AKAHVCSNDA GVHQLVNHWL RTHACMEPYI IATHRHLSSM HPIYKLLHPH
601: MRYTLEINAL ARQSLINGGG VIEACFSPGR YSMEISSAAY KSMWRFDMEA LPADLIRRGM AVEDTSMPLG VKLVIEDYPY AADGLLIWSA IKEYVESYVD
701: YYYSEPNSVT SDLELQGWWN EIKNKGHVDK KNEPWWPKLV TKEDLSGILT TMIWTASAQH AAINFGQYPF GGYVPNRPTL MRKLIPHEDD PSYENFILHP
801: EYTFLASLPT QLQATKVMAV KDTLSTHSAD EEYMYQLHEI QQFSVNDHEI LEILKRFSAK LKEIEDTINQ RNKDIRLKNR SGAGVPPYEL LLPTSGPGVT
901: CRGIPNSISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.