Factsheet for PGSC0003DMT400063446

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063654	Potato	cytosol	48.88	80.04
PGSC0003DMT400063461	Potato	cytosol	67.66	78.39
PGSC0003DMT400063452	Potato	cytosol	76.87	77.35
PGSC0003DMT400028158	Potato	cytosol	81.09	75.64
PGSC0003DMT400054145	Potato	cytosol	75.12	70.4
VIT_14s0128g00780.t01	Wine grape	cytosol	72.39	67.75
VIT_14s0128g00790.t01	Wine grape	cytosol	72.26	66.86
CDY70916	Canola	cytosol	41.79	66.67
VIT_06s0004g01580.t01	Wine grape	cytosol	26.87	64.48
KRH68548	Soybean	cytosol	68.66	64.34
KRH33939	Soybean	cytosol, endoplasmic reticulum	67.91	63.12
PGSC0003DMT400063469	Potato	cytosol	66.17	63.11
Bra021322.1-P	Field mustard	cytosol	67.16	63.01
AT1G55020.1	Thale cress	cytosol	66.42	62.17
GSMUA_Achr1P22970_001	Banana	cytosol	63.31	60.17
PGSC0003DMT400063477	Potato	cytosol	63.93	60.05
PGSC0003DMT400081370	Potato	cytosol	65.05	59.64
GSMUA_AchrUn_...	Banana	cytosol	62.69	58.95
GSMUA_Achr1P24370_001	Banana	cytosol	60.45	57.38
GSMUA_AchrUn_...	Banana	cytosol	55.85	57.27
GSMUA_Achr6P25110_001	Banana	cytosol	56.47	57.18
Os03t0700400-00	Rice	cytosol, plasma membrane	8.83	56.35
TraesCS4A01G359800.1	Wheat	cytosol	36.82	55.74
GSMUA_Achr6P25090_001	Banana	cytosol	58.08	55.73
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	60.07	55.07
EER93612	Sorghum	cytosol	59.08	54.85
TraesCS6D01G122000.1	Wheat	cytosol	21.02	54.52
TraesCS5A01G378800.2	Wheat	cytosol	52.74	54.5
GSMUA_Achr9P19250_001	Banana	plasma membrane	64.43	54.47
Zm00001d033623_P003	Maize	cytosol	58.46	54.21
EES04025	Sorghum	cytosol	58.33	54.03
TraesCS4A01G275800.1	Wheat	cytosol	16.04	53.97
EER93611	Sorghum	cytosol	59.58	53.94
Os03t0738600-01	Rice	plasma membrane, plastid	58.08	53.68
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	59.2	53.66
TraesCS4D01G035100.1	Wheat	cytosol	58.58	53.64
TraesCS5B01G382600.1	Wheat	cytosol	57.34	53.54
HORVU5Hr1G093770.1	Barley	cytosol	57.46	53.53
TraesCS4A01G275900.1	Wheat	cytosol, unclear	58.46	53.53
TraesCS5B01G382300.1	Wheat	cytosol, unclear	57.34	53.36
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	57.34	53.36
Zm00001d033624_P001	Maize	cytosol	58.83	53.33
TraesCS4B01G037800.1	Wheat	cytosol	58.21	53.3
TraesCS5A01G378900.1	Wheat	cytosol	57.21	53.24
TraesCS5A01G378700.1	Wheat	cytosol	57.21	53.24
TraesCS5B01G382400.1	Wheat	cytosol, golgi	56.59	53.15
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	57.96	53.08
Os03t0699700-01	Rice	cytosol, plastid	56.97	53.07
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	56.97	53.01
Zm00001d042541_P002	Maize	cytosol	58.21	52.94
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	56.34	52.61
EES04028	Sorghum	cytosol	57.09	52.58
TraesCS4B01G037700.3	Wheat	cytosol, golgi	55.97	52.26
TraesCS4D01G035200.1	Wheat	cytosol	53.48	51.87
KXG37783	Sorghum	cytosol	57.21	51.51
GSMUA_Achr6P25080_001	Banana	cytosol	49.63	51.48
TraesCS6B01G160400.1	Wheat	mitochondrion	55.72	51.32
TraesCS3B01G602500.1	Wheat	cytosol	56.22	51.31
TraesCS5D01G388800.1	Wheat	cytosol	57.21	51.28
TraesCS6A01G132200.1	Wheat	mitochondrion	55.6	51.2
TraesCS6A01G132500.1	Wheat	mitochondrion	55.6	51.2
Zm00001d042540_P008	Maize	cytosol	56.72	51.12
TraesCS3B01G605700.1	Wheat	cytosol	56.22	51.07
TraesCS5A01G379000.1	Wheat	nucleus, unclear	48.63	50.78
TraesCS5D01G513100.1	Wheat	cytosol	53.36	49.42
Os11t0575600-01	Rice	mitochondrion	52.49	48.62
HORVU5Hr1G117110.1	Barley	cytosol	53.36	48.37
PGSC0003DMT400074322	Potato	cytosol	26.49	48.19
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	28.73	47.34
PGSC0003DMT400034472	Potato	cytosol	26.24	47.2
TraesCS6B01G395700.1	Wheat	cytosol	46.14	45.69
CDY43490	Canola	cytosol, plasma membrane	67.16	44.89
TraesCS6D01G121900.1	Wheat	mitochondrion	24.88	44.74
PGSC0003DMT400020118	Potato	cytosol	35.95	41.7
PGSC0003DMT400058933	Potato	plastid	44.4	39.06
PGSC0003DMT400045047	Potato	cytosol, plastid	43.41	38.35
PGSC0003DMT400081909	Potato	plastid	41.17	36.82
PGSC0003DMT400074324	Potato	cytosol	13.81	32.08
GSMUA_Achr6P25100_001	Banana	cytosol	48.26	3.23

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M1CAP3	PFAM:PF00305	PFAM:PF01477
EnsemblPlantsGene:PGSC0003DMG400024689	PGSC:PGSC0003DMG400024689	EnsemblPlants:PGSC0003DMT400063446	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF91	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00029603A5	SEG:seg

Description

Lipoxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400024689]

Coordinates

chr1:+:76963545..76966941

Molecular Weight (calculated)

91401.3 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.343

Length

804 amino acids

Sequence
(BLAST)

001: MLLGKIVDTI TGKDDGKKVK GTVILMKKNV LDFTDINASV VDGVIEFLGR NVSFQLITND SEAKHSNPAY LENWLTHITP IIAGESAFRV TFDWDLDEFG
101: VPGAFIIKNL HLNEFFVKSL TLDDVPNHGK IHFVCNSWIY PSFKYKSDRI FFANQAYLPS ETPETLRKYR ENELVTLRGN GNGKLEEWDR VYDYACYNDL
201: GEPDKGKEYA RSILGGSSEY PYPRRGRTGR KPTKTDPNCE SRIPLLMSLD IYVPRDKRFG HALFDNTPNE FDSFADVLKL YEGGIKLPRG PLLKAITDSI
301: PLEILKDILQ TDGQGLLKYP TPRVIQEDKT AWRTDEEFGR EMLAGINPVL ISGLQEFPPK SKLDTNIYGN QNSTITKEHV EDKLDGLIID EAIKTNKIFI
401: LNHHDIVMPY LRRMNMSANT KAYASRTLLF LQDNGTLKPL AIELSLPHPD GDQFGTVSKV YTPADQGVEC SIWQLAKAYA AVNDTGIHQL ISHWLNTHAV
501: MEPFVIATNR QLSVLHPIHK LLHPHFRDTM NINALARQIL VNCGGFVEMF LFPANYSMEM SAVAYKDWVF PEQALPSDLI KRGVAVEDLT CPHGVRLLIQ
601: DYPYAVDGLE IWSAIKSWVT EYCNFHYKSD EKVQKDGELQ AWWKEIREEG HGDKKDEPWW PKMETVQELI DSCTIIIWIA SALHAAVNFG QYPYGDKVFL
701: KTIVPQLQTL LGISVLEILS RHASDEVYLG QRDTPEWTKD QEPLLAFERF GKKLNDIEDR IMQMNGDHKK WKNRSGPVKV PYTLLFPTSE EGLTGKGIPN
801: SVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.