Factsheet for TraesCS6B01G160400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G122000.1	Wheat	cytosol	35.28	99.35
TraesCS6A01G132500.1	Wheat	mitochondrion	98.97	98.97
TraesCS6A01G132200.1	Wheat	mitochondrion	98.97	98.97
TraesCS6D01G121900.1	Wheat	mitochondrion	50.63	98.88
KRH35534	Soybean	cytosol	33.22	64.73
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	61.4	62.25
TraesCS5B01G382300.1	Wheat	cytosol, unclear	61.17	61.81
TraesCS4B01G037700.3	Wheat	cytosol, golgi	60.94	61.79
CDY70916	Canola	cytosol	35.4	61.31
PGSC0003DMT400063654	Potato	cytosol	34.25	60.9
TraesCS5B01G382600.1	Wheat	cytosol	60.02	60.86
TraesCS5B01G382400.1	Wheat	cytosol, golgi	59.56	60.75
TraesCS4B01G037800.1	Wheat	cytosol	58.88	58.54
VIT_14s0128g00780.t01	Wine grape	cytosol	57.16	58.09
GSMUA_Achr1P22970_001	Banana	cytosol	56.01	57.8
VIT_14s0128g00790.t01	Wine grape	cytosol	56.93	57.19
KRH16725	Soybean	cytosol	15.12	57.14
PGSC0003DMT400081370	Potato	cytosol	57.16	56.9
KRG91271	Soybean	cytosol	55.56	56.53
Solyc09g075860.2.1	Tomato	cytosol, nucleus	56.7	56.44
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	55.67	56.38
PGSC0003DMT400028158	Potato	cytosol	55.67	56.38
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	55.56	56.33
TraesCS3B01G602500.1	Wheat	cytosol	56.82	56.3
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	55.33	56.16
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.12	55.93
PGSC0003DMT400063446	Potato	cytosol	51.32	55.72
TraesCS3B01G605700.1	Wheat	cytosol	56.36	55.59
Bra021322.1-P	Field mustard	cytosol	54.41	55.43
Solyc01g099180.2.1	Tomato	cytosol	54.18	55.39
PGSC0003DMT400054145	Potato	cytosol	54.3	55.24
Os11t0575600-01	Rice	mitochondrion	54.41	54.72
AT1G55020.1	Thale cress	cytosol	53.84	54.71
KRH33939	Soybean	cytosol, endoplasmic reticulum	53.95	54.45
PGSC0003DMT400063469	Potato	cytosol	52.58	54.45
KRH68548	Soybean	cytosol	53.38	54.31
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	53.15	54.08
PGSC0003DMT400063452	Potato	cytosol	49.48	54.07
PGSC0003DMT400063461	Potato	cytosol	42.96	54.03
VIT_05s0020g03170.t01	Wine grape	cytosol	54.18	54.0
Solyc01g099200.2.1	Tomato	cytosol, plastid	52.0	53.98
TraesCS6B01G395700.1	Wheat	cytosol	50.17	53.94
PGSC0003DMT400063477	Potato	cytosol	52.46	53.5
VIT_06s0004g01580.t01	Wine grape	cytosol	20.5	53.43
KRH44093	Soybean	endoplasmic reticulum	51.78	53.43
Solyc01g099210.2.1	Tomato	cytosol	52.81	53.42
KRH62403	Soybean	cytosol, endoplasmic reticulum	13.86	53.3
KRH44090	Soybean	endoplasmic reticulum	52.12	52.91
KRH10050	Soybean	endoplasmic reticulum	51.78	52.74
Solyc09g075870.1.1	Tomato	cytosol	51.55	52.69
KRH57987	Soybean	cytosol	15.46	52.33
AT3G22400.1	Thale cress	cytosol	52.81	52.03
KRH47522	Soybean	endoplasmic reticulum, nucleus	51.55	52.02
CDY46325	Canola	cytosol	52.12	51.59
KRH47066	Soybean	endoplasmic reticulum, nucleus	50.74	51.57
KRH44094	Soybean	endoplasmic reticulum	51.2	51.56
KRH23266	Soybean	cytosol	48.57	51.33
Bra039948.1-P	Field mustard	cytosol	52.12	51.3
KRH23265	Soybean	endoplasmic reticulum, nucleus	50.86	51.27
KRH47525	Soybean	endoplasmic reticulum	50.74	51.04
CDY38326	Canola	cytosol	51.78	50.96
Bra023829.1-P	Field mustard	cytosol	52.58	50.83
KRH10051	Soybean	endoplasmic reticulum, nucleus	49.83	50.82
KRH23268	Soybean	endoplasmic reticulum	49.6	50.76
KRH10053	Soybean	endoplasmic reticulum	49.37	50.53
KRH44095	Soybean	endoplasmic reticulum	50.06	50.46
CDY64191	Canola	cytosol	52.35	50.39
KRH44097	Soybean	cytosol, endoplasmic reticulum	49.83	50.12
KRH47067	Soybean	endoplasmic reticulum	49.48	50.0
KRH13357	Soybean	endoplasmic reticulum	13.86	50.0
KRH23269	Soybean	endoplasmic reticulum	46.62	49.51
KRH44092	Soybean	nucleus	48.11	49.01
KRH47069	Soybean	endoplasmic reticulum	25.32	48.57
KRG88464	Soybean	cytosol	24.86	47.59
KRH47064	Soybean	endoplasmic reticulum	30.7	47.02
TraesCS1B01G226400.1	Wheat	cytosol	43.53	45.02
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	26.12	44.62
Solyc01g099150.2.1	Tomato	nucleus	41.35	41.88
CDY43490	Canola	cytosol, plasma membrane	54.3	39.4
TraesCS6B01G014400.1	Wheat	cytosol	26.8	38.94
TraesCS2B01G333600.1	Wheat	plastid	39.98	38.06
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	39.86	37.54
TraesCS4B01G295200.1	Wheat	plastid	39.18	37.05
TraesCS6B01G193400.1	Wheat	plastid	37.92	36.74
TraesCS5B01G006500.1	Wheat	plastid	37.46	35.24
TraesCS7B01G145200.1	Wheat	plastid	36.88	34.7
TraesCS5B01G033000.1	Wheat	plastid	36.43	33.47

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF54
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS6B01G160400	EnsemblPlants:TraesCS6B01G160400.1	:

Description

No Description!

Coordinates

chr6B:+:164357494..164360310

Molecular Weight (calculated)

99430.4 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.403

Length

873 amino acids

Sequence
(BLAST)

001: MFGWMTPPQL KGKVVLMRRN LLDLNHWQQP LSHDTWDEVT TKGVTCQLIS STVADPNDES GTRGLLGEEE RVEHWVLHLP PINHGDTTYD VTFDWDVKKQ
101: GIPGAVIIRN YHATQFLLKT ITIDDVPGHA GPIVFVANSW VYNTNKYHYD RVFFTNDTYL PSEMPTLLQP FREDELRILR GDDPRQKNGA YEEHDRVYRY
201: DLYNDLGDPD HKNPRPTLGG PDSLYPYPRR GRTGRKPMVT DPTCESRNVL PVLQQFYVPR DENFNHVKKA DFTAYLIKAI SGGILPLLRQ QFDSVSPREF
301: DDFEDMYKLY EGGLKIPDIP ALDELFKSFP PLRSIMPAGG DFLLKMPMPH VIKEDKLAWR TDEEFAREML AGLNPHIITR LNVFPPRSTL EGYGDQTSKI
401: TVEHIQHNLG KLNVDKAIDA KRLFILDHHD NFMPHLLKIN SLPNTFVYAT RTLLFLQDDG TLKPIAIELS KPLLNDLGTK VVGADSKVYT PPSCGSESEW
501: AVQDTIWQLA KAYAAVNDSA WHGLISHWLH THAVIEPFVI ATNRQLSVTH PIHKLLQPHY RDTMTINALA RQVLISAGGF FEMTVCPGEH ALRISSEVYR
601: NWNFTEQALP VDLIKRGVAK ADTESPCGVS LHIKDYPYAV DGLAVWSAIE TWVDEYCRIY YPCDDVLRSD VELQAWWKEV REVGHGDIKD QPWWPKMTTV
701: NELVRSCATI IWIASALHAA VNFGQYSYAG YLPNRPTVSR RQMPEPGTKE YKEVETDPDL AFIHTITSQL QSIIGVSVIE VLSNHSSDEV YLGQRDEPKW
801: TSDVKAKKAF EDFSQKLIDI EKRIMNMNAN RRLKNRNGPA KFPYMLLYPN TSDIDGESAT GITAKGIPNS ISI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.