Factsheet for TraesCS4B01G037900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, cytosol, golgi, nucleus

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G275800.1	Wheat	cytosol	27.18	97.91
TraesCS4B01G037700.3	Wheat	cytosol, golgi	97.56	97.56
TraesCS4D01G035200.1	Wheat	cytosol	92.92	96.5
Zm00001d033623_P003	Maize	cytosol	84.79	84.2
EER93612	Sorghum	cytosol	83.97	83.49
Os03t0700400-00	Rice	cytosol, plasma membrane	12.08	82.54
TraesCS5B01G382300.1	Wheat	cytosol, unclear	74.8	74.54
TraesCS5B01G382400.1	Wheat	cytosol, golgi	73.05	73.48
TraesCS5B01G382600.1	Wheat	cytosol	72.59	72.59
TraesCS4B01G037800.1	Wheat	cytosol	67.36	66.06
TraesCS6B01G395700.1	Wheat	cytosol	60.05	63.67
KRH35534	Soybean	cytosol	32.64	62.72
TraesCS3B01G602500.1	Wheat	cytosol	64.0	62.54
GSMUA_Achr1P22970_001	Banana	cytosol	60.74	61.82
TraesCS3B01G605700.1	Wheat	cytosol	63.41	61.69
CDY70916	Canola	cytosol	36.0	61.51
TraesCS6B01G160400.1	Wheat	mitochondrion	62.25	61.4
KRH16725	Soybean	cytosol	16.26	60.61
PGSC0003DMT400063654	Potato	cytosol	33.91	59.47
VIT_14s0128g00780.t01	Wine grape	cytosol	59.23	59.37
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.88	58.82
PGSC0003DMT400028158	Potato	cytosol	58.3	58.24
VIT_14s0128g00790.t01	Wine grape	cytosol	58.77	58.23
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	58.19	58.19
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	57.61	57.67
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.8	57.63
PGSC0003DMT400054145	Potato	cytosol	57.38	57.58
Bra021322.1-P	Field mustard	cytosol	57.26	57.53
PGSC0003DMT400081370	Potato	cytosol	58.07	57.01
Solyc09g075860.2.1	Tomato	cytosol, nucleus	57.96	56.9
KRG91271	Soybean	cytosol	56.68	56.88
AT1G55020.1	Thale cress	cytosol	56.56	56.69
PGSC0003DMT400063446	Potato	cytosol	52.61	56.34
VIT_05s0020g03170.t01	Wine grape	cytosol	57.26	56.28
KRH68548	Soybean	cytosol	55.75	55.94
KRH57987	Soybean	cytosol	16.72	55.81
PGSC0003DMT400063477	Potato	cytosol	55.4	55.72
Solyc09g075870.1.1	Tomato	cytosol	55.17	55.62
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.63	55.51
Solyc01g099210.2.1	Tomato	cytosol	55.63	55.5
Solyc01g099180.2.1	Tomato	cytosol	55.05	55.5
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	55.05	55.24
KRH33939	Soybean	cytosol, endoplasmic reticulum	55.28	55.03
Solyc01g099200.2.1	Tomato	cytosol, plastid	53.54	54.82
KRH23266	Soybean	cytosol	52.5	54.72
KRH23265	Soybean	endoplasmic reticulum, nucleus	54.82	54.5
KRH44093	Soybean	endoplasmic reticulum	53.54	54.49
KRH10050	Soybean	endoplasmic reticulum	54.12	54.38
PGSC0003DMT400063469	Potato	cytosol	53.19	54.33
PGSC0003DMT400063461	Potato	cytosol	43.79	54.32
PGSC0003DMT400063452	Potato	cytosol	50.41	54.32
KRH44090	Soybean	endoplasmic reticulum	54.12	54.19
KRH10051	Soybean	endoplasmic reticulum, nucleus	53.54	53.86
AT3G22400.1	Thale cress	cytosol	55.4	53.84
VIT_06s0004g01580.t01	Wine grape	cytosol	20.91	53.73
KRH47522	Soybean	endoplasmic reticulum, nucleus	53.89	53.64
KRH44094	Soybean	endoplasmic reticulum	53.89	53.52
Bra039948.1-P	Field mustard	cytosol	55.05	53.44
CDY46325	Canola	cytosol	54.7	53.4
KRH44095	Soybean	endoplasmic reticulum	53.43	53.12
CDY38326	Canola	cytosol	54.7	53.1
KRH47066	Soybean	endoplasmic reticulum, nucleus	52.85	52.97
KRH47525	Soybean	endoplasmic reticulum	53.31	52.88
KRH10053	Soybean	endoplasmic reticulum	52.38	52.87
KRH44097	Soybean	cytosol, endoplasmic reticulum	53.08	52.65
KRH23268	Soybean	endoplasmic reticulum	51.92	52.4
KRH23269	Soybean	endoplasmic reticulum	49.94	52.31
Bra023829.1-P	Field mustard	cytosol	54.82	52.27
KRH47067	Soybean	endoplasmic reticulum	52.26	52.08
CDY64191	Canola	cytosol	54.7	51.93
KRH47069	Soybean	endoplasmic reticulum	27.06	51.21
KRG88464	Soybean	cytosol	26.95	50.88
KRH13357	Soybean	endoplasmic reticulum	14.17	50.41
KRH44092	Soybean	nucleus	48.43	48.66
KRH47064	Soybean	endoplasmic reticulum	32.06	48.42
TraesCS1B01G226400.1	Wheat	cytosol	45.06	45.97
Solyc01g099150.2.1	Tomato	nucleus	42.51	42.46
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	24.62	41.49
CDY43490	Canola	cytosol, plasma membrane	57.14	40.9
TraesCS6B01G014400.1	Wheat	cytosol	27.64	39.6
TraesCS2B01G333600.1	Wheat	plastid	41.46	38.93
TraesCS4B01G295200.1	Wheat	plastid	40.53	37.81
TraesCS6B01G193400.1	Wheat	plastid	39.37	37.62
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	40.42	37.54
TraesCS7B01G145200.1	Wheat	plastid	40.3	37.39
TraesCS5B01G006500.1	Wheat	plastid	39.49	36.64
TraesCS5B01G033000.1	Wheat	plastid	38.1	34.53

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF49	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4B01G037900
EnsemblPlants:TraesCS4B01G037900.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:27518879..27523337

Molecular Weight (calculated)

96071.4 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.285

Length

861 amino acids

Sequence
(BLAST)

001: MILGGLIDGL TGANKSARLK GTVVLMRKNV LDLTDFGATI MDGIGDFFGK GVTCQLISST LIDHDNGGRG KVGAEAELEQ WVTSLPSLTT GESKFGLTFD
101: WEVEKLGVPG AIIVNNHHSS EFLLKTVTLH DVPGRGNLSF VANSWIYPTS SYTYSRVFFA NDTYLPSQMP AALKPYRDDE LRNLRGDDQQ GPYQEHDRVY
201: RYDVYNDLGE GRPVLGGSAD HPYPRRGRTG RKPNANDPNL ESRLSLLEQI YVPRDEKFGH LKTSDFLGYS IKAITQGILP AVRTYVDTTP GEFDSFQDII
301: NLYEGGIKLP NVPALEELRK QFPLQLIKDL LPVGGDSLLK LPVPHIIQAD KQAWRTDEEF AREVLAGVNP VMITRLTEFP PKSSLDPSKF GDHTSTITAA
401: HIEKNLEGLT VQQALESNRL YILDHHDRFM PFLIDVNNLP GNFIYATRTL FFLRGDGRLT PLAIELSEPV IQGGLTTAKS KVYTPVPSGS VEGWVWEFAK
501: AYVAVNDSGW HQLVSHWLNT HAVMEPFVIS TNRQLSVTHP VHKLLSPHYR DTMTINALAR QTLINAGGIF EMTVFPGKFA LGMSSVVYKD WKFTEQGLPD
601: DLIKRGMAVE DPSSPYKVRL LVSDYPYAAD GLAIWHAIEQ YVSEYLAIYY PDDGVVQGDV ELQAWWKEAR EVGHGDLKDA PWWPRMQAVG ELAKACTTII
701: WIGSALHAAV NFGQYPYAGF LPNRPTVSRR RMPEPGTDEY AELERDPERA FIHTITSQIQ TIIGISLLEV LSKHSSDELY LGQRDTPEWT SDPKALEVFK
801: RFSERLVEIE SKVVGMNHDP ELKNRNGPAK FPYMLLYPNT SDHKGAAAGL TAKGIPNSIS I

Best Arabidopsis Sequence Match ( AT3G22400.1 )
(BLAST)

001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI

Arabidopsis Description

LOX5Linoleate 9S-lipoxygenase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.