Factsheet for Solyc09g075860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081370	Potato	cytosol	96.35	96.35
KRH35534	Soybean	cytosol	38.43	75.22
Solyc09g075870.1.1	Tomato	cytosol	70.7	72.6
KRG91271	Soybean	cytosol	68.99	70.51
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	68.87	70.15
VIT_05s0020g03170.t01	Wine grape	cytosol	68.76	68.84
GSMUA_Achr1P22970_001	Banana	cytosol	66.02	68.44
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	66.7	68.02
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	66.48	67.63
TraesCS4A01G275800.1	Wheat	cytosol	18.02	66.11
AT3G22400.1	Thale cress	cytosol	66.36	65.69
Solyc01g099180.2.1	Tomato	cytosol	63.85	65.57
KRG88464	Soybean	cytosol	33.98	65.35
CDY46325	Canola	cytosol	65.68	65.31
Bra039948.1-P	Field mustard	cytosol	65.91	65.16
CDY38326	Canola	cytosol	65.56	64.83
Bra023829.1-P	Field mustard	cytosol	66.7	64.78
CDY64191	Canola	cytosol	66.48	64.28
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	61.92	63.29
GSMUA_AchrUn_...	Banana	cytosol	61.35	62.92
TraesCS6D01G122000.1	Wheat	cytosol	22.23	62.9
Solyc01g099200.2.1	Tomato	cytosol, plastid	60.32	62.9
Solyc01g099210.2.1	Tomato	cytosol	61.23	62.22
GSMUA_AchrUn_...	Banana	cytosol	55.19	61.73
GSMUA_Achr1P24370_001	Banana	cytosol	59.41	61.51
TraesCS4A01G359800.1	Wheat	cytosol	36.83	60.83
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	60.21	60.21
EER93612	Sorghum	cytosol	58.49	59.24
TraesCS4A01G275900.1	Wheat	cytosol, unclear	59.18	59.11
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	59.18	59.11
TraesCS4B01G037800.1	Wheat	cytosol	59.18	59.11
Zm00001d033623_P003	Maize	cytosol	58.38	59.05
Os03t0699700-01	Rice	cytosol, plastid	57.92	58.86
TraesCS4D01G035100.1	Wheat	cytosol	58.84	58.77
Os03t0700400-00	Rice	cytosol, plasma membrane	8.44	58.73
GSMUA_Achr9P19250_001	Banana	plasma membrane	63.28	58.36
TraesCS4D01G035200.1	Wheat	cytosol	55.07	58.26
EER93611	Sorghum	cytosol	58.95	58.22
TraesCS5A01G378800.2	Wheat	cytosol	51.43	57.97
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	56.9	57.96
TraesCS4B01G037700.3	Wheat	cytosol, golgi	56.78	57.84
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	58.38	57.72
GSMUA_Achr6P25110_001	Banana	cytosol	52.22	57.68
Zm00001d033624_P001	Maize	cytosol	58.27	57.61
GSMUA_Achr6P25090_001	Banana	cytosol	54.73	57.28
EES04025	Sorghum	cytosol	56.56	57.14
TraesCS5B01G382400.1	Wheat	cytosol, golgi	55.64	57.01
KXG37783	Sorghum	cytosol	58.04	57.0
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	56.1	56.94
TraesCS3B01G602500.1	Wheat	cytosol	57.01	56.75
TraesCS5B01G382300.1	Wheat	cytosol, unclear	55.87	56.71
TraesCS5A01G378700.1	Wheat	cytosol	55.87	56.71
TraesCS6B01G160400.1	Wheat	mitochondrion	56.44	56.7
Os03t0738600-01	Rice	plasma membrane, plastid	55.99	56.44
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	55.53	56.37
TraesCS6A01G132200.1	Wheat	mitochondrion	56.1	56.36
EES04028	Sorghum	cytosol	56.1	56.36
TraesCS6A01G132500.1	Wheat	mitochondrion	56.1	56.36
HORVU5Hr1G093770.1	Barley	cytosol	55.42	56.32
TraesCS3B01G605700.1	Wheat	cytosol	56.44	55.93
Zm00001d042541_P002	Maize	cytosol	56.21	55.77
TraesCS5B01G382600.1	Wheat	cytosol	54.73	55.75
TraesCS5A01G378900.1	Wheat	cytosol	54.5	55.32
Zm00001d042540_P008	Maize	cytosol	56.1	55.16
TraesCS5D01G513100.1	Wheat	cytosol	53.48	54.03
TraesCS5D01G388800.1	Wheat	cytosol	54.96	53.73
TraesCS5A01G379000.1	Wheat	nucleus, unclear	46.86	53.38
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	29.3	52.66
GSMUA_Achr6P25080_001	Banana	cytosol	46.52	52.65
Os11t0575600-01	Rice	mitochondrion	51.77	52.3
HORVU5Hr1G117110.1	Barley	cytosol	52.57	51.97
Solyc09g055900.2.1	Tomato	cytosol	26.57	50.43
TraesCS6B01G395700.1	Wheat	cytosol	46.07	49.75
TraesCS6D01G121900.1	Wheat	mitochondrion	25.09	49.22
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	28.28	48.53
Solyc01g009680.2.1	Tomato	plastid	24.06	47.63
Solyc01g099150.2.1	Tomato	nucleus	46.64	47.45
Solyc03g122340.2.1	Tomato	cytosol	43.33	41.85
Solyc01g006560.2.1	Tomato	plastid	40.82	39.69
Solyc05g014790.2.1	Tomato	plastid	40.94	39.41
Solyc01g006540.2.1	Tomato	plastid	40.14	39.29
Solyc12g011040.1.1	Tomato	nucleus, plastid	39.0	38.34
Solyc09g055890.2.1	Tomato	cytosol	13.8	32.61
GSMUA_Achr6P25100_001	Banana	cytosol	45.38	3.31

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	UniProt:K4CVG3	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF53	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:Solyc09g075860.2	EnsemblPlants:Solyc09g075860.2.1	UniParc:UPI000276BD64	SEG:seg	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4CVG3]

Coordinates

chr9:+:67508407..67513076

Molecular Weight (calculated)

99683.5 Da

IEP (calculated)

5.614

GRAVY (calculated)

-0.364

Length

877 amino acids

Sequence
(BLAST)

001: MLEKWLGVVC GKNNIDTIDD NNIHINGQKV RGTVVLMKKN VLDFTDVGAS LLDRFHEVIG KGVSLQLISA DHAEPGNGCT GKLGQPAFLE KWISTLTSIS
101: AGDATFNVTF DWDESMGVPG AFIIKNYHHS QFYLRTVVLE DVPGHGELHF VCNSWVYPEH RYKYDRMFFA NKTYLPSNTP EPLRPYREQE LLSLRGSGSG
201: KLKEWDRVYD YAFYNDLGFP DKGPDYVRPV LGGSKEYPYP RRGRTSRRAT KTGFADPMSE SRLPPLGLDI YVPRDERFTP MKLSDFLAYA VKSLGQVLVP
301: EIVALFDKTI NEFDSFEDVL KLYEGGIKLP DHHLKKLRQC IPWEMLKELV RSDGEPFLKF PMPDVIKVDR SAWRTDEEFG REMLAGVNPV IIRRLQEFPP
401: ASTLDPEVYG NQTSSIKREH IEKNMDGVTV DEAIEGNRLF ILDHHDALLP YLRRINTTKT KTYASRTLLF LQDNGTLRPV AIELSLPHPQ GDKHGATSLV
501: FTPADEGVEG TVWQLAKAYA AVNDSGYHQL ISHWLNTHAT IEPFVIAANR HLSVLHPIFK LLQPHFRDTM YINALARQIL INAGGILELT VFPGKYAMEM
601: SSIVYKSWVF TEQGLPADLL KRGIAVPDSS QPYGLKLLIE DYPFAVDGLE VWAAIEAWVD DYCSFYYSTD EVIRDDTELQ SWWMEVRNEG HGDLKDEPWW
701: PQMQTRSELI ETCTTIIWVA SALHAAVNFG QYPYAGYLPN RPTVSRRFMP EPGTPEYAEL ESNPDVAYLK TITAQFQTLL GVSLIEILSR HSSEEIYLGQ
801: RENPEWTSDV EPRQSFQRFH DRLVDIENRI VERNSDSRWK NRNGPVKVPY MLLYPNASGD NSESGLTGKG IPNSVSI

Best Arabidopsis Sequence Match ( AT3G22400.1 )
(BLAST)

001: MIHTDIAEIL CVKPKTTKKT KTMEEDVKKT TTMKIEGEVV VMKKNLLDFK DVMASLLDRV NELLGRRVSL HLISSHQPDP ANEKRGRLGK AAHLEKWVTK
101: IKTSVTAEET AFGVTFDWDE SMGPPAAFVI KNHHHSQFYL KSLTLRGFPD GEGGATAIHF ICNSWIYPNH RYRSDRVFFS NKAYLPSETP ELIKELREEE
201: LKNLRGNEKG GEFKEWDRVY DYAYYNDLGA PDKGPDSVRP VLGGSPELPY PRRGKTGRKS TKSDPKSESR LALLNLNIYV PRDERFSHVK FSDFLAYALK
301: SVTQVLVPEI ASVCDKTINE FDSFEDVFHL YDGSIKLANG HTISKLRDVI PWEMFRELVR NDGERFLKYP LPDILKESRS AWRTDEEFAR EMLAGLNPVV
401: ISRLQEFPPK SCLDSAKYGN QHSSIRTEHI ESNMNGLNVQ EALEQNKLYI LDHHDALMPY LTRINSTNTK TYATRTLLLL QADGTLKPLA IELSLPHAQG
501: ESYGSVSKVF TPAEKGVEGS VWQLAKAYAA VNDSGYHQLI SHWLQTHAVI EPFIIASNRQ LSVVHPIHKL LHPHFRDTMN INALARHVLI NSDGVLERTV
601: FPSRYAMEMS SSIYKNWVFT EQALPKDLLK RGVAVEDPNS DNGVKLLIED YPFAVDGLEI WSAIKTWVTE YCTFYYNNDK TVQTDTEIQS WWTELRTKGH
701: GDKRHESWWP SMQTRDDLIE TCTIIIWIAS ALHAAVNFGQ YPYAGFLPNR PTVSRRFMPE PGTDEYAELE EDADVAFLKT ITPQLQTLLG ISIIEILSMH
801: STDEIYLGQR DSPNWTADDE PLEAFKRFGK ELELIENNII RRNNDKRFKN RTGPVNIPYT LLYPNTTDYT REGGITGKGI PNSVSI

Arabidopsis Description

LOX5Linoleate 9S-lipoxygenase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.