Factsheet for Solyc01g099190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22892874
nucleus: 25464976
plastid: 26371478

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063654	Potato	cytosol	52.56	91.85
Solyc01g099180.2.1	Tomato	cytosol	79.84	80.21
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	79.14	78.77
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	75.64	75.38
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	72.38	72.21
VIT_14s0128g00780.t01	Wine grape	cytosol	70.28	70.2
VIT_14s0128g00790.t01	Wine grape	cytosol	69.93	69.04
VIT_06s0004g01580.t01	Wine grape	cytosol	26.92	68.96
CDY70916	Canola	cytosol	39.74	67.66
KRH68548	Soybean	cytosol	66.2	66.2
Solyc01g099200.2.1	Tomato	cytosol, plastid	64.1	65.4
KRH33939	Soybean	cytosol, endoplasmic reticulum	65.38	64.86
Bra021322.1-P	Field mustard	cytosol	64.34	64.41
GSMUA_Achr1P22970_001	Banana	cytosol	62.35	63.24
AT1G55020.1	Thale cress	cytosol	63.05	62.98
Solyc01g099210.2.1	Tomato	cytosol	62.82	62.46
Solyc09g075860.2.1	Tomato	cytosol, nucleus	63.29	61.92
Os03t0700400-00	Rice	cytosol, plasma membrane	9.09	61.9
GSMUA_AchrUn_...	Banana	cytosol	60.72	60.94
GSMUA_AchrUn_...	Banana	cytosol	55.01	60.2
GSMUA_Achr1P24370_001	Banana	cytosol	58.86	59.62
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	34.73	58.32
GSMUA_Achr6P25110_001	Banana	cytosol	53.96	58.31
GSMUA_Achr6P25090_001	Banana	cytosol	56.76	58.11
Solyc09g075870.1.1	Tomato	cytosol	57.58	57.85
TraesCS4A01G359800.1	Wheat	cytosol	35.43	57.25
EER93612	Sorghum	cytosol	57.69	57.16
Zm00001d033623_P003	Maize	cytosol	57.58	56.98
GSMUA_Achr9P19250_001	Banana	plasma membrane	62.94	56.78
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	57.93	56.67
EER93611	Sorghum	cytosol	58.51	56.53
TraesCS6D01G122000.1	Wheat	cytosol	20.4	56.45
TraesCS5A01G378800.2	Wheat	cytosol	50.93	56.17
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	58.04	56.14
TraesCS4A01G275800.1	Wheat	cytosol	15.62	56.07
Os03t0699700-01	Rice	cytosol, plastid	55.83	55.5
Zm00001d033624_P001	Maize	cytosol	57.34	55.47
TraesCS5B01G382600.1	Wheat	cytosol	55.48	55.28
TraesCS4D01G035200.1	Wheat	cytosol	53.38	55.25
TraesCS4A01G275900.1	Wheat	cytosol, unclear	56.53	55.24
TraesCS4D01G035100.1	Wheat	cytosol	56.53	55.24
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	55.24	55.05
TraesCS4B01G037800.1	Wheat	cytosol	56.29	55.01
TraesCS5A01G378900.1	Wheat	cytosol	55.36	54.98
Os03t0738600-01	Rice	plasma membrane, plastid	55.71	54.94
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	56.18	54.9
HORVU5Hr1G093770.1	Barley	cytosol	55.13	54.81
TraesCS5B01G382300.1	Wheat	cytosol, unclear	55.13	54.75
TraesCS5B01G382400.1	Wheat	cytosol, golgi	54.43	54.56
TraesCS5A01G378700.1	Wheat	cytosol	54.9	54.51
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	54.9	54.51
TraesCS4B01G037700.3	Wheat	cytosol, golgi	54.66	54.47
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	54.78	54.4
EES04025	Sorghum	cytosol	54.66	54.03
TraesCS3B01G602500.1	Wheat	cytosol	55.36	53.92
Solyc01g099150.2.1	Tomato	nucleus	54.08	53.83
TraesCS3B01G605700.1	Wheat	cytosol	55.36	53.67
Zm00001d042541_P002	Maize	cytosol	55.24	53.62
KXG37783	Sorghum	cytosol	55.71	53.53
GSMUA_Achr6P25080_001	Banana	cytosol	48.25	53.42
TraesCS6B01G160400.1	Wheat	mitochondrion	54.08	53.15
TraesCS6A01G132200.1	Wheat	mitochondrion	54.08	53.15
TraesCS6A01G132500.1	Wheat	mitochondrion	54.08	53.15
EES04028	Sorghum	cytosol	53.96	53.04
TraesCS5A01G379000.1	Wheat	nucleus, unclear	47.55	52.99
TraesCS5D01G388800.1	Wheat	cytosol	55.13	52.73
Zm00001d042540_P008	Maize	cytosol	54.2	52.13
TraesCS5D01G513100.1	Wheat	cytosol	51.52	50.92
Os11t0575600-01	Rice	mitochondrion	51.4	50.81
HORVU5Hr1G117110.1	Barley	cytosol	51.86	50.17
Solyc09g055900.2.1	Tomato	cytosol	26.34	48.92
TraesCS6B01G395700.1	Wheat	cytosol	45.45	48.03
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	27.27	47.95
TraesCS6D01G121900.1	Wheat	mitochondrion	24.83	47.65
Solyc01g009680.2.1	Tomato	plastid	23.89	46.28
CDY43490	Canola	cytosol, plasma membrane	64.45	45.97
Solyc03g122340.2.1	Tomato	cytosol	43.94	41.52
Solyc05g014790.2.1	Tomato	plastid	42.42	39.96
Solyc01g006540.2.1	Tomato	plastid	40.56	38.84
Solyc01g006560.2.1	Tomato	plastid	40.56	38.58
Solyc12g011040.1.1	Tomato	nucleus, plastid	39.16	37.67
Solyc09g055890.2.1	Tomato	cytosol	15.38	35.58
GSMUA_Achr6P25100_001	Banana	cytosol	46.97	3.36

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
UniProt:K4B0V6	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF91	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:Solyc01g099190.2
EnsemblPlants:Solyc01g099190.2.1	UniParc:UPI0002768B75	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:K4B0V6]

Coordinates

chr1:-:89490879..89495214

Molecular Weight (calculated)

96959.4 Da

IEP (calculated)

5.556

GRAVY (calculated)

-0.345

Length

858 amino acids

Sequence
(BLAST)

001: MSLGGIVDAI LGKDDRPKVK GRVILMKKNV LDFINIGASV VDGISDLLGQ KVSIQLISGS VNSDGLEGKL SNPAYLESWL TDITPITAGE STFSVTFDWD
101: DEFGVPGAFI IKNFHLNEFF LKSLTLEDVP NYGKIHFVCN SWVYPAFRYK SDRIFFANQA YLPSETPQPL RKYRENELVA LRGDGTGKLE EWDRVYDYAC
201: YNDLGDPDKG EEYARPILGG SSEYPYPRRG RTGREPTKAD PNCESRNPLP MSLDIYVPRD ERFGHVKKSD FLTSSLKSSL QTLLPAFKAL CDNTPNEFNS
301: FADVLNLYEG GIKLPEGPWL KAITDNISSE ILKDILQTDG QGLLKYPTPQ VIQGDKTAWR TDEEFGREML AGSNPVLISR LQEFPPKSKL DPTIYGNQNS
401: TITTEHVQDK LNGLTVNEAI KSNRLFILNH HDIVMPLLRK INMSANTKAY ASRTLLFLQD DRTLKPLAIE LSLPHPDGDQ FGTVSKVYTP ADQGVEGSIW
501: QFAKAYVAVN DMGIHQLISH WLNTHAVIEP FVIATNRHLS VLHPIHKLLH PHFRNTMNIN ALARETLTYD GGFETSLFPT KYSMEMSAAA YKDWVFPEQA
601: LPADLLKRGV AVEDLSSPHG IRLLILDYPY AVDGLEIWAA IKSWVTEYCK FYYKSDETVE KDTELQAWWK ELREEGHGDK KDEAWWPKLQ TRQELRDCCT
701: IIIWIASALH AALHFGLYSY AGYLPNRPTL SCNLMPEPGS VEYEELKTNP DKVFLKTFVP QLQSLLEISI FEVSSRHASD EVYLGQRDSI EWTKDKEPLV
801: AFERFGKMLS DIENRIMIMN SHKSWKNRSG PVNVPYTLLF PTSEEGLTGK GIPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.