Factsheet for TraesCS4A01G275900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G035100.1	Wheat	cytosol	99.2	99.2
TraesCS4B01G037800.1	Wheat	cytosol	98.41	98.41
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	93.51	93.51
Os03t0700700-01	Rice	cytosol, plasma membrane, plastid	79.61	79.7
TraesCS4A01G275800.1	Wheat	cytosol	20.39	74.9
EER93611	Sorghum	cytosol	75.4	74.55
Zm00001d033624_P001	Maize	cytosol	75.28	74.52
Zm00001d013493_P001	Maize	cytosol, extracellular, mitochondrion	74.94	74.18
KXG37783	Sorghum	cytosol	73.23	72.0
TraesCS4A01G359800.1	Wheat	cytosol	41.46	68.55
KRH35534	Soybean	cytosol	34.05	66.74
CDY70916	Canola	cytosol	38.15	66.47
TraesCS5A01G378800.2	Wheat	cytosol	58.43	65.94
GSMUA_Achr1P22970_001	Banana	cytosol	62.64	65.01
TraesCS5A01G378700.1	Wheat	cytosol	62.87	63.89
VIT_14s0128g00780.t01	Wine grape	cytosol	62.07	63.45
PGSC0003DMT400063654	Potato	cytosol	35.31	63.14
TraesCS5A01G378900.1	Wheat	cytosol	61.16	62.15
VIT_14s0128g00790.t01	Wine grape	cytosol	61.5	62.14
Solyc08g029000.2.1	Tomato	cytosol, extracellular, nucleus	59.23	60.39
Solyc01g099160.2.1	Tomato	cytosol, extracellular, nucleus	58.88	59.98
Bra021322.1-P	Field mustard	cytosol	58.54	59.98
PGSC0003DMT400028158	Potato	cytosol	58.77	59.86
KRH16725	Soybean	cytosol	15.72	59.74
TraesCS5A01G379000.1	Wheat	nucleus, unclear	52.28	59.61
Solyc08g014000.2.1	Tomato	cytosol, nucleus, plastid	58.2	59.42
AT1G55020.1	Thale cress	cytosol	58.09	59.37
KRH68548	Soybean	cytosol	57.86	59.21
Solyc09g075860.2.1	Tomato	cytosol, nucleus	59.11	59.18
PGSC0003DMT400081370	Potato	cytosol	59.11	59.18
PGSC0003DMT400054145	Potato	cytosol	57.63	58.97
KRH62399	Soybean	cytosol, endoplasmic reticulum	15.83	58.9
TraesCS6A01G132500.1	Wheat	mitochondrion	58.31	58.65
TraesCS6A01G132200.1	Wheat	mitochondrion	58.31	58.65
PGSC0003DMT400063446	Potato	cytosol	53.53	58.46
KRG91271	Soybean	cytosol	56.95	58.28
VIT_06s0004g01580.t01	Wine grape	cytosol	22.1	57.91
Solyc01g099180.2.1	Tomato	cytosol	56.04	57.61
KRH62403	Soybean	cytosol, endoplasmic reticulum	14.81	57.27
KRH33939	Soybean	cytosol, endoplasmic reticulum	56.04	56.88
PGSC0003DMT400063452	Potato	cytosol	51.71	56.82
Solyc09g075870.1.1	Tomato	cytosol	55.24	56.79
VIT_05s0020g03170.t01	Wine grape	cytosol	56.61	56.74
KRH57987	Soybean	cytosol	16.63	56.59
Solyc01g099190.2.1	Tomato	cytosol, extracellular, nucleus, plastid	55.24	56.53
PGSC0003DMT400063461	Potato	cytosol	44.65	56.48
Bra039948.1-P	Field mustard	cytosol	56.49	55.92
Solyc01g099200.2.1	Tomato	cytosol, plastid	53.53	55.89
AT3G22400.1	Thale cress	cytosol	56.38	55.87
PGSC0003DMT400063469	Potato	cytosol	53.53	55.75
CDY46325	Canola	cytosol	55.92	55.67
KRH10050	Soybean	endoplasmic reticulum	54.33	55.66
PGSC0003DMT400063477	Potato	cytosol	54.21	55.61
CDY38326	Canola	cytosol	55.92	55.36
Solyc01g099210.2.1	Tomato	cytosol	54.21	55.16
KRH44090	Soybean	endoplasmic reticulum	53.87	55.0
Bra023829.1-P	Field mustard	cytosol	56.49	54.93
KRH44093	Soybean	endoplasmic reticulum	52.62	54.61
CDY64191	Canola	cytosol	56.15	54.35
KRH23265	Soybean	endoplasmic reticulum, nucleus	53.53	54.27
KRH23266	Soybean	cytosol	50.91	54.12
KRH44094	Soybean	endoplasmic reticulum	53.08	53.75
KRH44095	Soybean	endoplasmic reticulum	52.85	53.58
KRH44097	Soybean	cytosol, endoplasmic reticulum	52.51	53.11
KRH10053	Soybean	endoplasmic reticulum	51.59	53.11
KRH47522	Soybean	endoplasmic reticulum, nucleus	52.28	53.06
KRH10051	Soybean	endoplasmic reticulum, nucleus	51.59	52.92
KRH47066	Soybean	endoplasmic reticulum, nucleus	51.71	52.85
KRH47525	Soybean	endoplasmic reticulum	51.94	52.53
KRH23268	Soybean	endoplasmic reticulum	51.03	52.52
KRH47067	Soybean	endoplasmic reticulum	51.37	52.2
KRH13357	Soybean	endoplasmic reticulum	14.35	52.07
KRH23269	Soybean	endoplasmic reticulum	47.95	51.22
KRH47069	Soybean	endoplasmic reticulum	25.63	49.45
KRG88464	Soybean	cytosol	25.51	49.12
KRH47064	Soybean	endoplasmic reticulum	31.89	49.12
KRH44092	Soybean	nucleus	47.49	48.66
TraesCS1A01G212900.1	Wheat	cytosol	45.79	47.63
Solyc01g099170.2.1	Tomato	cytosol, mitochondrion	26.08	44.81
Solyc01g099150.2.1	Tomato	nucleus	42.71	43.5
CDY43490	Canola	cytosol, plasma membrane	58.66	42.81
TraesCS7A01G034900.1	Wheat	mitochondrion	13.9	41.64
TraesCS4A01G009400.1	Wheat	plastid	41.0	39.0
TraesCS2A01G315100.2	Wheat	plastid	41.69	38.94
TraesCS2A01G525500.1	Wheat	plastid	40.77	38.62
TraesCS6A01G166000.1	Wheat	golgi	38.84	37.85
TraesCS5A01G007900.1	Wheat	plastid	39.07	36.96
TraesCS7A01G246200.1	Wheat	plastid	39.07	36.84
TraesCS5A01G032800.1	Wheat	mitochondrion	30.07	30.73

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF49	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS4A01G275900
EnsemblPlants:TraesCS4A01G275900.1	TIGR:cd01751	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:584694417..584699590

Molecular Weight (calculated)

99439.0 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.378

Length

878 amino acids

Sequence
(BLAST)

001: MLLHGLVDRL TGKNKQAWKE GKIRGTAVLV KSDVLNLGDF HASLLDGVHD ILGKDDGVIF HLVSATAPDP QNPRRGKVGK PAHLEEMVVT MKSKAAGESV
101: FKVTFEWDDS QGIPGAVVVR NTYRSEYLLK TLTLHGVPGK GTVVFVANSW IYPNVDRVFF ANDTYLPSKM PALLVQYRQD ELNNLRGDGT TGKYEEWDRV
201: YRYDYYNDLG EPDKGHPRPV LGGTQELPYP RRCRTGRPPT KTDPRSESRI PQYKIQEALN IYVPRDERFG HLKLSDFLGY SLKAITEAIL PVIRTYVDTT
301: PKEFDSFQDI YDLYDGLLKV PDNQHLKELK KKIPLQFIKS LLPVAGDDLL NLPLPHVIRS NDYAWRSDEE FAREMLAGVN PVCIKRLTEF PVKSTLDPSV
401: YGDQSSTITE DQIQQNLEEG LTVKQAMEKN RLFILDHHDN FMPFLDRINK LEGNYIYASR TLLFLKADGT LKPLAIELSL PHPDGIQHGA KSTVYLPADI
501: DSGVDGQIWQ LAKAYASVDD SAWHQLISHW LNTHAVIEPF VIATNRQLSV VHPVHKLLSP HYRDTLNINA LARTTLINAG GVFEMTVFPE KYALEMSSIV
601: YKNWKLTEQG LPDDLVKRGM AVPDSSSPYG VRLLIKDYPY AVDGLVIWWA IERWVNEYLA IYYPNDGVLR ADKELEEWWK EVREVGHGDL KDADWWPKMV
701: TVQELAKTCT TIIWVASALH AAVNFGQYPY AGYLPNRPTV SRRKMPEEGE EEYKQLQKGG KEADKVFIHT ITSQFQTILG ITLIEILSKH SSDEVYLGQR
801: DTPEWTSDAK ALEAFKRFGT RLMEIEKRIL DMNKDPALKN RNGPVKMPYM LLYPNTSDAG GEKGLGLTAM GIPNSVSI

Best Arabidopsis Sequence Match ( AT1G55020.1 )
(BLAST)

001: MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT
101: FDYETDFGYP GAFLIRNSHF SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE ELVSLRGTGE GELKEWDRVY
201: DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD
301: SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN
401: STITKSHIEH NLDGLTVEEA LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK FGAVSEVYTP GEGVYDSLWQ
501: LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ
601: ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC
701: TIIIWVASAL HAAVNFGQYP VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS DEVYLGQRDS KEWAAEKEAL
801: EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL FPSSEGGVTG RGIPNSVSI

Arabidopsis Description

LOX1Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.