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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20458513
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 20458513 doi
S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa
National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH47066 Soybean endoplasmic reticulum, nucleus 86.0 86.5
KRH44094 Soybean endoplasmic reticulum 77.31 77.05
KRH47064 Soybean endoplasmic reticulum 49.54 75.09
KRH47522 Soybean endoplasmic reticulum, nucleus 74.31 74.22
KRH44090 Soybean endoplasmic reticulum 71.64 71.98
KRH47525 Soybean endoplasmic reticulum 71.53 71.2
KRH10050 Soybean endoplasmic reticulum 70.6 71.18
KRH23265 Soybean endoplasmic reticulum, nucleus 71.06 70.9
KRH44093 Soybean endoplasmic reticulum 68.75 70.21
KRH23266 Soybean cytosol 66.44 69.49
KRH10051 Soybean endoplasmic reticulum, nucleus 67.36 67.99
KRH23268 Soybean endoplasmic reticulum 66.55 67.41
KRH16725 Soybean cytosol 17.94 67.1
KRH44095 Soybean endoplasmic reticulum 67.25 67.09
KRH10053 Soybean endoplasmic reticulum 65.97 66.82
KRH23269 Soybean endoplasmic reticulum 63.54 66.79
KRH44097 Soybean cytosol, endoplasmic reticulum 67.01 66.71
KRH62399 Soybean cytosol, endoplasmic reticulum 18.06 66.1
KRH47069 Soybean endoplasmic reticulum 34.26 65.05
KRH62403 Soybean cytosol, endoplasmic reticulum 16.78 63.88
KRH57987 Soybean cytosol 18.63 62.4
KRH35534 Soybean cytosol 32.06 61.83
KRH44092 Soybean nucleus 60.88 61.38
KRH68548 Soybean cytosol 58.91 59.32
Os03t0700400-00 Rice cytosol, plasma membrane 8.45 57.94
KRH33939 Soybean cytosol, endoplasmic reticulum 57.64 57.57
KRH13357 Soybean endoplasmic reticulum 16.09 57.44
TraesCS4A01G275800.1 Wheat cytosol 15.86 57.32
TraesCS4A01G359800.1 Wheat cytosol 35.07 57.06
GSMUA_Achr6P25110_001 Banana cytosol 51.85 56.42
GSMUA_AchrUn_... Banana cytosol 51.16 56.38
GSMUA_AchrUn_... Banana cytosol 55.67 56.26
GSMUA_Achr1P22970_001 Banana cytosol 54.86 56.03
GSMUA_Achr6P25090_001 Banana cytosol 54.05 55.73
KRG91271 Soybean cytosol 54.86 55.24
GSMUA_Achr1P24370_001 Banana cytosol 53.94 55.02
Zm00001d033623_P003 Maize cytosol 54.75 54.56
EER93612 Sorghum cytosol 54.63 54.5
TraesCS6D01G122000.1 Wheat cytosol 19.33 53.87
Os03t0700700-01 Rice cytosol, plasma membrane, plastid 54.51 53.71
HORVU5Hr1G093700.3 Barley cytosol, plasma membrane 53.36 53.36
EES04025 Sorghum cytosol 53.59 53.34
Os03t0699700-01 Rice cytosol, plastid 53.24 53.3
TraesCS5A01G378700.1 Wheat cytosol 53.12 53.12
TraesCS5B01G382300.1 Wheat cytosol, unclear 53.01 53.01
TraesCS5A01G378800.2 Wheat cytosol 47.57 52.83
HORVU5Hr1G093770.1 Barley cytosol 52.55 52.61
EER93611 Sorghum cytosol 54.05 52.59
TraesCS5D01G388700.1 Wheat cytosol, golgi, unclear 52.55 52.55
TraesCS5B01G382600.1 Wheat cytosol 52.2 52.38
EES04028 Sorghum cytosol 52.89 52.35
TraesCS4B01G037900.1 Wheat cytosol, golgi, nucleus, plastid, unclear 52.08 52.26
TraesCS5B01G382400.1 Wheat cytosol, golgi 51.74 52.22
Zm00001d013493_P001 Maize cytosol, extracellular, mitochondrion 53.59 52.2
TraesCS4D01G035200.1 Wheat cytosol 49.88 51.99
TraesCS5A01G378900.1 Wheat cytosol 51.97 51.97
Os03t0738600-01 Rice plasma membrane, plastid 52.2 51.84
TraesCS4B01G037700.3 Wheat cytosol, golgi 51.5 51.68
KXG37783 Sorghum cytosol 53.24 51.51
HORVU4Hr1G005920.1 Barley cytosol, plasma membrane 52.31 51.48
Zm00001d042541_P002 Maize cytosol 52.66 51.47
TraesCS4A01G275900.1 Wheat cytosol, unclear 52.2 51.37
TraesCS4B01G037800.1 Wheat cytosol 52.2 51.37
Zm00001d033624_P001 Maize cytosol 52.66 51.3
TraesCS4D01G035100.1 Wheat cytosol 52.08 51.25
Zm00001d042540_P008 Maize cytosol 52.66 51.01
TraesCS5D01G388800.1 Wheat cytosol 52.55 50.61
GSMUA_Achr9P19250_001 Banana plasma membrane 55.56 50.47
TraesCS5A01G379000.1 Wheat nucleus, unclear 44.91 50.39
TraesCS3B01G605700.1 Wheat cytosol 51.5 50.28
TraesCS3B01G602500.1 Wheat cytosol 50.93 49.94
TraesCS5D01G513100.1 Wheat cytosol 49.77 49.54
TraesCS6B01G160400.1 Wheat mitochondrion 50.0 49.48
HORVU5Hr1G117110.1 Barley cytosol 50.69 49.38
TraesCS6A01G132200.1 Wheat mitochondrion 49.88 49.37
TraesCS6A01G132500.1 Wheat mitochondrion 49.88 49.37
KRG88464 Soybean cytosol 25.81 48.9
Os11t0575600-01 Rice mitochondrion 48.73 48.5
HORVU5Hr1G054200.1 Barley cytosol, mitochondrion 27.31 48.36
GSMUA_Achr6P25080_001 Banana cytosol 42.59 47.48
TraesCS6B01G395700.1 Wheat cytosol 43.4 46.18
TraesCS6D01G121900.1 Wheat mitochondrion 22.57 43.62
KRH10882 Soybean cytosol 21.06 41.94
KRG89889 Soybean cytosol, plastid 41.44 41.63
KRG89883 Soybean cytosol, plastid 41.2 41.44
KRH06197 Soybean nucleus 44.1 41.32
KRH47615 Soybean nucleus 44.21 41.21
KRH29669 Soybean plastid 42.82 41.07
KRH69027 Soybean plastid 42.82 41.07
KRG97300 Soybean plastid 42.59 40.93
KRH42646 Soybean plastid 43.4 40.72
KRH66214 Soybean cytosol 40.74 40.65
KRH07345 Soybean cytosol, plastid 40.28 40.42
KRH29668 Soybean nucleus 42.13 40.18
KRG89888 Soybean nucleus 41.9 40.09
KRH18682 Soybean cytosol, mitochondrion 41.78 39.63
KRH17965 Soybean plastid 41.9 39.43
KRH24671 Soybean cytosol, plastid 41.67 39.39
KRH21441 Soybean cytosol 39.81 37.8
KRH50048 Soybean cytosol 38.31 36.37
KRH30640 Soybean cytosol 6.94 32.09
GSMUA_Achr6P25100_001 Banana cytosol 41.2 2.96
Protein Annotations
Gene3D:1.20.245.10Gene3D:2.60.60.20PDB:2IUKGene3D:3.10.450.60Gene3D:4.10.372.10Gene3D:4.10.375.10
MapMan:50.1.12EntrezGene:547835UniProt:A0A0R0J5A9ProteinID:CAA39604.1CHEMBL:CHEMBL3120043EnsemblPlantsGene:GLYMA_07G007000
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006629GO:GO:0006631GO:GO:0006633GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016491GO:GO:0016702GO:GO:0031408
GO:GO:0046872GO:GO:0051213GO:GO:0055114InterPro:IPR001024InterPro:IPR013819InterPro:IPR027433
EnsemblPlants:KRH47067ProteinID:KRH47067ProteinID:KRH47067.1InterPro:LipOaseInterPro:LipOase_CInterPro:LipOase_CS
InterPro:LipOase_C_sfInterPro:LipOase_Fe_BSInterPro:LipOase_plantInterPro:Lipoxygenase_dom_3UniProt:P24095PFAM:PF00305
PFAM:PF01477InterPro:PLAT/LH2_domInterPro:PLAT/LH2_dom_sfPRINTS:PR00087PRINTS:PR00468ScanProsite:PS00081
ScanProsite:PS00711PFscan:PS50095PFscan:PS51393PANTHER:PTHR11771PANTHER:PTHR11771:SF48SMART:SM00308
SUPFAM:SSF48484SUPFAM:SSF49723EMBL:U04526UniParc:UPI000012E81FSEG:seg:
Description
LOX1.4hypothetical protein
Coordinates
chr7:+:509819..514700
Molecular Weight (calculated)
96822.4 Da
IEP (calculated)
6.049
GRAVY (calculated)
-0.280
Length
864 amino acids
Sequence
(BLAST)
001: MFGIFDKGQK IKGTVVLMPK NVLDFNAITS IGKGGVIDTA TGILGQGVSL VGGVIDTATS FLGRNISMQL ISATQTDGSG NGKVGKEVYL EKHLPTLPTL
101: GARQDAFSIF FEWDASFGIP GAFYIKNFMT DEFFLVSVKL EDIPNHGTIE FVCNSWVYNF RSYKKNRIFF VNDTYLPSAT PAPLLKYRKE ELEVLRGDGT
201: GKRKDFDRIY DYDVYNDLGN PDGGDPRPIL GGSSIYPYPR RVRTGRERTR TDPNSEKPGE VYVPRDENFG HLKSSDFLTY GIKSLSHDVI PLFKSAIFQL
301: RVTSSEFESF EDVRSLYEGG IKLPTDILSQ ISPLPALKEI FRTDGENVLQ FPPPHVAKVS KSGWMTDEEF AREVIAGVNP NVIRRLQEFP PKSTLDPTLY
401: GDQTSTITKE QLEINMGGVT VEEALSTQRL FILDYQDAFI PYLTRINSLP TAKAYATRTI LFLKDDGTLK PLAIELSKPH PDGDNLGPES IVVLPATEGV
501: DSTIWLLAKA HVIVNDSGYH QLVSHWLNTH AVMEPFAIAT NRHLSVLHPI YKLLYPHYRD TININGLARQ SLINADGIIE KSFLPGKYSI EMSSSVYKNW
601: VFTDQALPAD LVKRGLAIED PSAPHGLRLV IEDYPYAVDG LEIWDAIKTW VHEYVSLYYP TDAAVQQDTE LQAWWKEAVE KGHGDLKEKP WWPKMQTTED
701: LIQSCSIIVW TASALHAAVN FGQYPYGGLI LNRPTLARRF IPAEGTPEYD EMVKNPQKAY LRTITPKFET LIDLSVIEIL SRHASDEIYL GERETPNWTT
801: DKKALEAFKR FGSKLTGIEG KINARNSDPS LRNRTGPVQL PYTLLHRSSE EGLTFKGIPN SISI
Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.