CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	KRG98502	AT4G26630.1	25387881
AT1G17420.1	KRG98507	AT4G26630.1	25387881
AT1G17420.1	KRH46360	AT4G26630.1	25387881
AT1G17420.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06197	Soybean	nucleus	97.63	98.16
KRH69027	Soybean	plastid	77.02	79.25
KRG97300	Soybean	plastid	76.81	79.2
KRH30640	Soybean	cytosol	15.64	77.54
Solyc03g122340.2.1	Tomato	cytosol	75.62	77.2
PGSC0003DMT400058933	Potato	plastid	75.62	76.7
AT1G72520.1	Thale cress	plastid	72.38	72.46
VIT_09s0002g01080.t01	Wine grape	cytosol	72.28	72.28
AT1G17420.1	Thale cress	cytosol, plastid	71.63	72.25
CDX81825	Canola	cytosol	71.63	72.25
CDY21750	Canola	cytosol, mitochondrion, plastid	71.41	72.03
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	71.2	71.82
CDY64617	Canola	cytosol	71.09	71.71
Bra016602.1-P	Field mustard	cytosol	70.98	71.6
CDX96769	Canola	cytosol	70.87	71.49
CDX82146	Canola	plastid	64.94	70.82
CDY49853	Canola	plastid	69.58	70.19
Bra008037.1-P	Field mustard	plastid	69.58	70.19
HORVU5Hr1G055110.2	Barley	mitochondrion	25.67	67.42
GSMUA_Achr3P07870_001	Banana	plastid	63.21	66.67
GSMUA_Achr9P16020_001	Banana	plastid	62.78	66.44
GSMUA_Achr10P...	Banana	cytosol	62.57	65.91
GSMUA_Achr8P22700_001	Banana	plastid	60.19	65.8
Os04t0447100-01	Rice	cytosol	54.69	63.69
Os03t0179900-01	Rice	plastid	62.35	62.96
TraesCS4B01G295200.1	Wheat	plastid	61.7	61.97
EER95400	Sorghum	mitochondrion	61.6	61.8
HORVU4Hr1G076570.6	Barley	cytosol, plastid	60.84	61.57
TraesCS4A01G009400.1	Wheat	plastid	61.06	61.32
TraesCS4D01G294100.1	Wheat	plastid	60.84	61.17
TraesCS2D01G313400.1	Wheat	plastid	58.14	59.23
TraesCS2B01G333600.1	Wheat	plastid	58.58	59.21
Zm00001d027893_P001	Maize	plastid	61.38	58.78
EES10882	Sorghum	plastid	58.36	58.55
KRH10882	Soybean	cytosol	27.29	58.29
TraesCS2A01G315100.2	Wheat	plastid	58.36	57.55
Zm00001d003533_P001	Maize	plastid	58.14	57.28
Zm00001d025524_P001	Maize	plastid	57.07	56.94
KRH21441	Soybean	cytosol	53.29	54.29
KRH42646	Soybean	plastid	53.4	53.75
KRH50048	Soybean	cytosol	52.43	53.41
KRH35534	Soybean	cytosol	23.3	48.21
KRH24671	Soybean	cytosol, plastid	47.25	47.92
KRH29668	Soybean	nucleus	46.49	47.57
KRG89889	Soybean	cytosol, plastid	44.01	47.44
KRG89883	Soybean	cytosol, plastid	43.26	46.68
KRH29669	Soybean	plastid	45.2	46.5
KRH17965	Soybean	plastid	45.2	45.64
KRG89888	Soybean	nucleus	44.44	45.63
KRH44093	Soybean	endoplasmic reticulum	41.1	45.04
KRH16725	Soybean	cytosol	11.22	45.02
KRH18682	Soybean	cytosol, mitochondrion	44.23	45.01
KRH44090	Soybean	endoplasmic reticulum	41.53	44.77
KRH68548	Soybean	cytosol	41.42	44.76
KRH33939	Soybean	cytosol, endoplasmic reticulum	41.64	44.62
KRH23266	Soybean	cytosol	39.7	44.55
KRH47522	Soybean	endoplasmic reticulum, nucleus	41.53	44.51
KRH10050	Soybean	endoplasmic reticulum	41.1	44.46
KRH44095	Soybean	endoplasmic reticulum	41.53	44.46
KRH47066	Soybean	endoplasmic reticulum, nucleus	41.1	44.35
KRH44094	Soybean	endoplasmic reticulum	41.42	44.29
KRH47067	Soybean	endoplasmic reticulum	41.21	44.21
KRH23265	Soybean	endoplasmic reticulum, nucleus	41.21	44.11
KRH10051	Soybean	endoplasmic reticulum, nucleus	40.45	43.81
KRH47525	Soybean	endoplasmic reticulum	40.99	43.78
KRH44097	Soybean	cytosol, endoplasmic reticulum	40.78	43.55
KRH23268	Soybean	endoplasmic reticulum	39.91	43.38
KRG91271	Soybean	cytosol	39.91	43.12
KRH57987	Soybean	cytosol	11.97	43.02
KRH10053	Soybean	endoplasmic reticulum	39.48	42.91
KRH47069	Soybean	endoplasmic reticulum	20.93	42.64
KRH23269	Soybean	endoplasmic reticulum	37.65	42.46
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.79	42.37
KRH44092	Soybean	nucleus	39.16	42.36
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.14	41.41
KRH47064	Soybean	endoplasmic reticulum	25.03	40.7
KRH13357	Soybean	endoplasmic reticulum	10.36	39.67
KRH07345	Soybean	cytosol, plastid	36.68	39.49
KRH66214	Soybean	cytosol	36.57	39.15
KRG88464	Soybean	cytosol	18.34	37.28

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100793614	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02004156	EnsemblPlantsGene:GLYMA_07G039900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1KHC6	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH47615
ProteinID:KRH47615	ProteinID:KRH47615.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI00023387C0	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:3288274..3294751

Molecular Weight (calculated)

104347.0 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.405

Length

927 amino acids

Sequence
(BLAST)

001: MALTKQILGS SLLERSMFVP SSSPSSLLNQ TRFLVPLENK RVVRVKRAAK FPVAAISEDL MKGSSSSPSS SSSSSSSSSS SSVSTEKPVK FKVRAVITVR
101: NKIKEDFKET IVKHIDALTD RIGRNVVLEL VSTEIDPKTK SAKKSNEAVL KDWSKKSNLK AERVNYTAEF IIDSSFGEPG AITVTNKHQK EFFLDSITIE
201: GFASGPVHFP CNSWVQSRKD LPGKRIFFSN KPYLPGDTPA GLRLLREKEL RNLRGDGKGV RNLSDRIYDY DIYNDLGNPD KGIELARPNL GGSDMYPYPR
301: RCRTGREPSD TDMYAESRVE KPLPMYVPRD ERFEESKQNT FTVKRLKAVL HNLIPGLKAS LSSSNQDFNE FSDVDGLYSE GLLIKLGWGL QDDVLKKIPF
401: VSKIQESSQG LLKYDTPKII SKDKFAWLRD DEFARQAIAG VNPVNIEKLQ VFPPVSKLDP EIYGPQESAL KEEHILNQLN GMTVQEAINE NKLFMIDYHD
501: IYLPFLEGIN ALDGRKSYAT RTIFFLTPRG TLKPVAIELS LPHAGPNSRS KRVVTPPVDA TTNWMWQLAK AHVCSNDAGV HQLVNHWLRT HANLEPFILA
601: AHRQLSAMHP IFKLLDPHMR YTLEINALAR QSLINADGII ENCFTPGRYA MEISSAAYKN FWRFDMDSLP ADLIRRGMAV PDPTQPHGLK LILEDYPYAA
701: DGILIWSAIE DWVRTYVNHY YPHSSLICND KELQSWYSES INVGHADLRH ESWWPTLNNS EDLVSILSTL IWNASAQHAA LNFGQYPYGG YVPNRPPLMR
801: RLIPEEGDPE YASFHADPQK YFLNALPSLL QATKFMAVVD TLSTHSPDEE YLGERQQPSI WSGDAEIVEA FYDFSAKVRQ IEKVIDSRNL DRTLRNRCGA
901: GVLPYELLAP SSEPGVTCRG VPNSVST

Best Arabidopsis Sequence Match ( AT1G72520.1 )
(BLAST)

001: MALANEIMGS RLIFERSSSL ASPFHSRFSI KKKTQRTQFS INPFDPRPMR AVNSSGVVAA ISEDLVKTLR ISTVGRKQEK EEEEEKSVKF KVRAVATVRN
101: KNKEDFKETL VKHLDAFTDK IGRNVVLELM STQVDPKTNE PKKSKAAVLK DWSKKSNSKA ERVHYTAEFT VDSAFGSPGA ITVTNKHQKE FFLESITIEG
201: FACGPVHFPC NSWVQSQKDH PSKRILFTNQ PYLPSETPSG LRTLREKELE NLRGNGKGER KLSDRIYDYD VYNDIGNPDI SRELARPTLG GREFPYPRRC
301: RTGRSSTDTD MMSERRVEKP LPMYVPRDEQ FEESKQNTFA ACRLKAVLHN LIPSLKASIL AEDFANFGEI DSLYKEGLLL KLGFQDDMFK KFPLPKIVTT
401: LQKSSEGLLR YDTPKIVSKD KYAWLRDDEF ARQAIAGINP VNIERVTSYP PVSNLDPEIY GPGLHSALTE DHIIGQLDGL TVQQALETNR LFMVDYHDIY
501: LPFLDRINAL DGRKAYATRT ILFLTRLGTL KPIAIELSLP SQSSSNQKSK RVVTPPVDAT SNWMWQLAKA HVGSNDAGVH QLVNHWLRTH ACLEPFILAA
601: HRQLSAMHPI FKLLDPHMRY TLEINAVARQ TLISADGVIE SCFTAGQYGL EISSAAYKNK WRFDMEGLPA DLIRRGMAVP DPTQPHGLKL LVEDYPYAND
701: GLLLWSAIQT WVRTYVERYY ANSNLIQTDT ELQAWYSESI NVGHADHRDA EWWPKLSTVE DLVSVITTII WLASAQHAAL NFGQYPYGGY VPNRPPLMRR
801: LIPDESDPEF TSFIEDPQKY FFSSMPSLLQ TTKFMAVVDT LSTHSPDEEY IGERQQPSIW TGDAEIVDAF YGFSAEIGRI EKEIDKRNRD PSRRNRCGAG
901: VLPYELMAPS SEPGVTCRGV PNSVSI

Arabidopsis Description

LOX4Lipoxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.