Factsheet for TraesCS2B01G333600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G17420.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G313400.1	Wheat	plastid	97.6	98.35
TraesCS2A01G315100.2	Wheat	plastid	97.16	94.79
Os04t0447100-01	Rice	cytosol	77.32	89.07
EES10882	Sorghum	plastid	85.71	85.06
Zm00001d003533_P001	Maize	plastid	84.95	82.78
Zm00001d025524_P001	Maize	plastid	82.99	81.92
GSMUA_Achr3P07870_001	Banana	plastid	68.48	71.44
GSMUA_Achr9P16020_001	Banana	plastid	68.05	71.23
GSMUA_Achr8P22700_001	Banana	plastid	65.76	71.11
VIT_00s0265g00170.t01	Wine grape	cytosol	36.64	66.53
TraesCS4B01G295200.1	Wheat	plastid	63.58	63.16
CDY21750	Canola	cytosol, mitochondrion, plastid	61.94	61.81
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	61.61	61.48
AT1G17420.1	Thale cress	cytosol, plastid	61.5	61.37
CDX81825	Canola	cytosol	61.4	61.26
CDY64617	Canola	cytosol	61.29	61.15
CDX96769	Canola	cytosol	61.18	61.04
Bra016602.1-P	Field mustard	cytosol	60.96	60.83
Solyc03g122340.2.1	Tomato	cytosol	59.54	60.13
VIT_09s0002g01080.t01	Wine grape	cytosol	60.74	60.09
PGSC0003DMT400058933	Potato	plastid	59.21	59.41
AT1G72520.1	Thale cress	plastid	59.87	59.29
CDX82146	Canola	plastid	54.85	59.18
Bra008037.1-P	Field mustard	plastid	59.11	58.98
CDY49853	Canola	plastid	59.0	58.87
KRH69027	Soybean	plastid	57.8	58.82
KRG97300	Soybean	plastid	57.58	58.73
KRH06197	Soybean	nucleus	59.0	58.68
KRH47615	Soybean	nucleus	59.21	58.58
KRH10882	Soybean	cytosol	24.1	50.92
KRH50048	Soybean	cytosol	50.05	50.44
KRH21441	Soybean	cytosol	47.66	48.02
TraesCS6B01G193400.1	Wheat	plastid	42.42	43.17
TraesCS7B01G145200.1	Wheat	plastid	42.97	42.46
TraesCS4B01G037800.1	Wheat	cytosol	40.02	41.8
TraesCS4B01G037900.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	38.93	41.46
TraesCS5B01G382300.1	Wheat	cytosol, unclear	39.04	41.44
TraesCS6B01G014400.1	Wheat	cytosol	27.15	41.43
TraesCS1B01G226400.1	Wheat	cytosol	37.51	40.76
TraesCS4B01G037700.3	Wheat	cytosol, golgi	38.17	40.65
TraesCS5B01G006500.1	Wheat	plastid	41.11	40.62
TraesCS3B01G605700.1	Wheat	cytosol	39.04	40.45
TraesCS5B01G382400.1	Wheat	cytosol, golgi	37.73	40.42
TraesCS5B01G382600.1	Wheat	cytosol	37.95	40.42
TraesCS6B01G160400.1	Wheat	mitochondrion	38.06	39.98
TraesCS3B01G602500.1	Wheat	cytosol	38.39	39.95
TraesCS5B01G033000.1	Wheat	plastid	39.59	38.21
TraesCS6B01G395700.1	Wheat	cytosol	33.37	37.68
TraesCS2B01G555400.2	Wheat	mitochondrion, plastid	35.55	35.17

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
EnsemblPlantsGene:TraesCS2B01G333600	EnsemblPlants:TraesCS2B01G333600.1	TIGR:cd01751	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:477328294..477332081

Molecular Weight (calculated)

102603.0 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.384

Length

917 amino acids

Sequence
(BLAST)

001: MPSMELLGRS FLQAAGSAST AAPRGGRERA GGGLCFASLG GRQGRPSRRT VRSKVPVGAL AERVVLTPAP AERVARPEAH PQSVAARAVV TVRRKRKVEV
101: KEQVAEQMDA YADRVGRSVL LELISTETDP RKGGPKKSKK SRLVGWFEKR EVKAELVVYT AEFTVDAAFG EPGAVTVLNR HQREFFIESI LVEGFPSGPA
201: HFTCNSWVQP TRVDPAPRVF FTNKPYLPSK TPPGLRELRR RELKELRGSG TGVRKTTDRA YDYDVYNDLG NPDKGAGFER PVLGGDKLPY PRRMRTARPS
301: TVTDEGAESR VEYPEPIYVS RDEEFEEGKN EMLSEGAIKA LLHNFMPLLV SSVSPDSRDF AGFHDVDNLF KEGLRLKQAL HDQLFQKIPF VRKIQESSEG
401: LLRYDTPDII KKDKFAWLRD DEFARQALAG INPVNIERLQ VFPPVSKLDP AVYGPPESAI TEEHIIGNLD GMSVQQALEE NKLYMLDYHD IFMPFLDRIN
501: SLDGRKAYGT RTLFFLTAGG TLKPIAIELC LPPMTDDCKR AKRVFTPPAD ATNIWLWQLA KAHVCSNDAG VHQLINHWLR THACMEPFII AAHRQMSAMH
601: PIFKLLKPHM RYTLKINALA RQILINGDGV IESGFTPGRY CMEMSSFAYD NLWRLDQEGL PADLIRRGMA VEDASQPHGL RLLIEDYPYA TDGLLLWSAI
701: ARWCEAYVTA YYPSDEAVQD DYELQSWYTE AVQVGHPDKC DAPWWPRLTT AGDLASVLTT LVWLCSAQHA ALNFGQYPLG GYIPNRPPLM RRLVPAESDP
801: EYEHLVADPH RFYLSALPSL TQTTTFMTVI DTLSTHSADE QYLGERPNEE WTADPAALAA AREFAAEVRR AEEEIERRNA DPARRNRCGA GVLPYELMAP
901: SSGPGITCRG VPNSVTI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.