Factsheet for VIT_00s0265g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G055110.2	Barley	mitochondrion	43.37	62.04
KRH10882	Soybean	cytosol	45.54	53.0
VIT_13s0064g01500.t01	Wine grape	cytosol	23.96	48.4
VIT_06s0004g01460.t01	Wine grape	plastid	49.9	42.14
Os04t0447100-01	Rice	cytosol	66.14	41.96
KRH21441	Soybean	cytosol	70.3	39.01
VIT_09s0002g01080.t01	Wine grape	cytosol	70.69	38.51
GSMUA_Achr8P22700_001	Banana	plastid	64.36	38.33
GSMUA_Achr9P16020_001	Banana	plastid	65.15	37.56
GSMUA_Achr3P07870_001	Banana	plastid	64.75	37.2
TraesCS2D01G313400.1	Wheat	plastid	66.53	36.92
TraesCS2B01G333600.1	Wheat	plastid	66.53	36.64
Zm00001d025524_P001	Maize	plastid	66.73	36.28
EES10882	Sorghum	plastid	66.34	36.26
Zm00001d003533_P001	Maize	plastid	66.93	35.92
Os03t0179900-01	Rice	plastid	64.95	35.73
TraesCS2A01G315100.2	Wheat	plastid	66.34	35.64
HORVU4Hr1G076570.6	Barley	cytosol, plastid	64.55	35.59
TraesCS4B01G295200.1	Wheat	plastid	63.96	34.99
TraesCS4D01G294100.1	Wheat	plastid	63.76	34.92
TraesCS4A01G009400.1	Wheat	plastid	63.76	34.89
EER95400	Sorghum	mitochondrion	63.76	34.85
GSMUA_Achr10P...	Banana	cytosol	59.41	34.09
VIT_06s0004g01500.t01	Wine grape	cytosol	52.08	33.25
Zm00001d027893_P001	Maize	plastid	63.56	33.16
VIT_06s0004g01480.t01	Wine grape	cytosol	51.29	32.66
VIT_01s0010g02750.t01	Wine grape	plastid	58.81	32.28
VIT_13s0064g01490.t01	Wine grape	cytosol	24.36	30.83
VIT_13s0064g01480.t01	Wine grape	plastid	54.65	30.56
VIT_06s0004g01510.t01	Wine grape	plastid	54.06	30.3
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	50.49	29.69
VIT_05s0020g03170.t01	Wine grape	cytosol	50.49	29.11
VIT_14s0128g00780.t01	Wine grape	cytosol	48.51	28.52
VIT_06s0004g01470.t01	Wine grape	cytosol	50.69	28.35
VIT_14s0128g00790.t01	Wine grape	cytosol	48.51	28.19
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	28.32	22.41
VIT_06s0004g01580.t01	Wine grape	cytosol	12.67	19.1
VIT_07s0289g00010.t01	Wine grape	cytosol	12.67	13.42

Protein Annotations

Gene3D:1.20.245.10	Gene3D:3.10.450.60	MapMan:50.1.12	ProteinID:CCB48822	ProteinID:CCB48822.1	UniProt:F6H9C9
EMBL:FN595499	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR013819	InterPro:LipOase
InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	PFAM:PF00305
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF56	SUPFAM:SSF48484	UniParc:UPI000210A6C8	ArrayExpress:VIT_00s0265g00170	EnsemblPlantsGene:VIT_00s0265g00170	EnsemblPlants:VIT_00s0265g00170.t01
SEG:seg	:	:	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6H9C9]

Coordinates

chrUn:-:19275939..19280403

Molecular Weight (calculated)

57073.2 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.181

Length

505 amino acids

Sequence
(BLAST)

001: YTLSSLRDDE FGRQAVAGIN PLTIQRLEVF PPISKLDPSI YGPQESAIKE EHIIHHLDGM SVQQALNENK LFILDYHDIY LPFLNRINAL DDRKAYGTRT
101: LFFLTTVGTL KPIAIELSLP PTDPNCPLKQ VLTPSVDATT SWLWQLGKAH VCSNDAGVHQ LIHHWLRTHA CIEPFIIAAH RQLSGMHPIF KLLKPHMRYT
201: LKINALARES LINAGGNIES FFTPGKYCME ISCAAYRDWW RFDLEGLPAD LIRRGVAVPD TTKVHGLRLL IEDYPYANDG LLIWSSIESL VQTYVNYYYS
301: DAEMIESDTE LQAWYNESRS VGHADLCHAS WWPTLSTPND LTSILTTIIW TVSGQHAAVN FGQYPYGGFI PARPPLMRQL VPKEHDPVYV DFIEDPQAYF
401: LSSLPSLLQA TKFMAVIEII SAHSPDEEYL GERKDLSTWS GDTEIIEAFY RFSVEIRRIE KEIEKRNADT SRRNRCGAGI SPYKLLIPSS GPGVTSKGIP
501: NSITV

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.