CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	EER91265	AT4G26630.1	25387881
AT1G17420.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003533_P001	Maize	plastid	95.35	93.62
Zm00001d025524_P001	Maize	plastid	90.48	89.99
Os04t0447100-01	Rice	cytosol	77.49	89.95
TraesCS2D01G313400.1	Wheat	plastid	85.17	86.48
TraesCS2B01G333600.1	Wheat	plastid	85.06	85.71
TraesCS2A01G315100.2	Wheat	plastid	85.61	84.15
GSMUA_Achr3P07870_001	Banana	plastid	67.42	70.88
GSMUA_Achr9P16020_001	Banana	plastid	66.99	70.66
GSMUA_Achr8P22700_001	Banana	plastid	64.72	70.52
VIT_00s0265g00170.t01	Wine grape	cytosol	36.26	66.34
EER95400	Sorghum	mitochondrion	62.66	62.66
CDX81825	Canola	cytosol	59.96	60.28
AT1G17420.1	Thale cress	cytosol, plastid	59.96	60.28
CDY21750	Canola	cytosol, mitochondrion, plastid	59.85	60.17
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	59.74	60.07
Solyc03g122340.2.1	Tomato	cytosol	58.98	60.02
CDY64617	Canola	cytosol	59.63	59.96
Bra016602.1-P	Field mustard	cytosol	59.63	59.96
CDX96769	Canola	cytosol	59.52	59.85
PGSC0003DMT400058933	Potato	plastid	58.98	59.63
VIT_09s0002g01080.t01	Wine grape	cytosol	59.52	59.33
KRG97300	Soybean	plastid	57.47	59.07
AT1G72520.1	Thale cress	plastid	59.09	58.96
KRH69027	Soybean	plastid	57.47	58.93
KRH06197	Soybean	nucleus	58.44	58.57
KRH47615	Soybean	nucleus	58.55	58.36
CDX82146	Canola	plastid	53.68	58.35
Bra008037.1-P	Field mustard	plastid	58.01	58.32
CDY49853	Canola	plastid	57.79	58.11
KRH10882	Soybean	cytosol	24.13	51.38
KRH50048	Soybean	cytosol	48.92	49.67
KRH21441	Soybean	cytosol	47.62	48.35
OQU80925	Sorghum	cytosol	42.53	45.43
EER93612	Sorghum	cytosol	40.04	42.73
KXG29701	Sorghum	plastid	41.13	41.44
EER93611	Sorghum	cytosol	39.61	41.22
KXG24148	Sorghum	cytosol	38.1	41.07
EES04025	Sorghum	cytosol	38.53	41.01
EES04028	Sorghum	cytosol	38.53	40.78
KXG37783	Sorghum	cytosol	39.18	40.54
KXG23911	Sorghum	cytosol, plastid	22.4	37.98
KXG27309	Sorghum	mitochondrion, plastid	35.5	36.16

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EntrezGene:8065835	UniProt:C5Y999	ncoils:Coil	EnsemblPlants:EES10882	ProteinID:EES10882	ProteinID:EES10882.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF67	SMART:SM00308	EnsemblPlantsGene:SORBI_3006G095600	SUPFAM:SSF48484	SUPFAM:SSF49723
unigene:Sbi.387	UniParc:UPI0001A86DA7	RefSeq:XP_002446554.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:46566240..46571064

Molecular Weight (calculated)

103490.0 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.440

Length

924 amino acids

Sequence
(BLAST)

001: MASAMELVGR SFLPGSAAAA SPAGRERRRG GPCFAAVGRE GSAHKRRPSL RSTAPVGALA ERVVVTPAPP EERAGTAPPE PHPQSVAARA VVTVRRRRKE
101: DAKRRVAEQL DAYADRVGRS VLLELISTET DPRKGGPKKS RRSALVGWFE KKDVKAERVV YTADFTVDGC FGEPGAVTVL NRHQREFFIE SIVVEGFPSG
201: PAHFTCNSWV QPTRVDRNPR VFFTNKPYLP AETPPGLQEL RRQELSDLRG EGGADTTGER RITDRVWEYD VYNDLGNPDK GAEFARPILG GEQQLPYPRR
301: MRTGRPKTFT DDRAESRVEY PEPIYVSRDE EFEEGKNEML SEGALKALLH NFMPLLVSSV SPDIRDFAGF HDVDNLFKEG LRLKQALQDQ LFQKIPFVRK
401: IQENSEGLLR YDTPDIIKKD KFAWLRDDEF ARQALAGINP VNIERLQAFP PMSKLDPAVY GPPESAITEE HIIGQLDGMS VRQALQDNRL YMLDYHDIFL
501: PFLDRINAQD GRKAYGTRTL FFLTAAGTLK PIAIELCLPP MTDGCARAKR VFTPPADATS NWLWQLAKAH VCSNDAGVHQ LINHWLRTHA CMEPFIISAH
601: RQLSAMHPIF KLLKPHMRYT LKINALARQI LINGDGVIES GFTPGRYCME MSSFAYQELW RLDQEGLPAD LIRRGMAVED PTQPHGLRLL IEDYPYATDG
701: LLLWDAITRW CDAYVAMYYP SDQAVQGDTE LQSWYREAVQ TGHADKRGAP WWPRLSTPGD LASLLTTLLW LTSAQHAALN FGQYPLGGYI PNRPPLMRRL
801: VPADGDPEYA HLVADPHRFF LSALPSLTQT TTFMTVIDTL STHSADEQYL GERPDEAWTA DPAALAAARE FADEVRRAEE EIDRRNADTG RRNRCGAGVL
901: PYELMAPTSG PGITCRGIPN SVTI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.