Factsheet for GSMUA_Achr8P22700_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17420.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16020_001	Banana	plastid	85.14	82.42
GSMUA_Achr3P07870_001	Banana	plastid	85.02	82.03
Os04t0447100-01	Rice	cytosol	66.75	71.11
TraesCS2D01G313400.1	Wheat	plastid	71.11	66.26
TraesCS2B01G333600.1	Wheat	plastid	71.11	65.76
EES10882	Sorghum	plastid	70.52	64.72
VIT_00s0265g00170.t01	Wine grape	cytosol	38.33	64.36
TraesCS2A01G315100.2	Wheat	plastid	70.87	63.94
Zm00001d025524_P001	Maize	plastid	69.34	63.29
Zm00001d003533_P001	Maize	plastid	70.17	63.23
GSMUA_Achr10P...	Banana	cytosol	65.33	62.95
Solyc03g122340.2.1	Tomato	cytosol	65.09	60.79
KRH06197	Soybean	nucleus	65.68	60.41
KRH47615	Soybean	nucleus	65.8	60.19
PGSC0003DMT400058933	Potato	plastid	64.86	60.18
CDY21750	Canola	cytosol, mitochondrion, plastid	64.98	59.96
CDX81825	Canola	cytosol	64.86	59.85
CDX82146	Canola	plastid	59.79	59.65
VIT_09s0002g01080.t01	Wine grape	cytosol	65.09	59.55
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	64.5	59.52
CDY64617	Canola	cytosol	64.39	59.41
AT1G17420.1	Thale cress	cytosol, plastid	64.27	59.3
CDX96769	Canola	cytosol	64.15	59.19
Bra016602.1-P	Field mustard	cytosol	64.15	59.19
AT1G72520.1	Thale cress	plastid	63.92	58.53
KRG97300	Soybean	plastid	62.03	58.51
KRH69027	Soybean	plastid	62.15	58.49
Bra008037.1-P	Field mustard	plastid	62.74	57.89
CDY49853	Canola	plastid	62.74	57.89
KRH10882	Soybean	cytosol	26.77	52.3
KRH21441	Soybean	cytosol	51.53	48.02
GSMUA_Achr6P28450_001	Banana	plastid	49.17	47.93
KRH50048	Soybean	cytosol	51.3	47.8
GSMUA_AchrUn_...	Banana	cytosol	40.09	43.37
GSMUA_Achr9P12470_001	Banana	plastid	42.57	42.82
GSMUA_Achr3P11780_001	Banana	plastid	41.98	42.08
GSMUA_Achr6P25110_001	Banana	cytosol	39.15	41.81
GSMUA_Achr1P22970_001	Banana	cytosol	41.27	41.37
GSMUA_AchrUn_...	Banana	cytosol	41.27	40.94
GSMUA_Achr6P25090_001	Banana	cytosol	39.98	40.45
GSMUA_Achr1P24370_001	Banana	cytosol	40.33	40.38
GSMUA_Achr2P05850_001	Banana	cytosol	38.92	40.1
GSMUA_Achr9P19250_001	Banana	plasma membrane	41.98	37.43
GSMUA_Achr6P25080_001	Banana	cytosol	32.08	35.1
GSMUA_Achr6P25100_001	Banana	cytosol	31.72	2.24

Protein Annotations

Gene3D:1.20.245.10	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10	MapMan:50.1.12
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G22700_001	EnsemblPlants:GSMUA_Achr8P22700_001
EnsemblPlants:GSMUA_Achr8T22700_001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M0TSS3
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF67
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI000295032C	SEG:seg	:

Description

Putative lipoxygenase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr8G22700_001]

Coordinates

chr8:+:27290658..27294557

Molecular Weight (calculated)

95415.6 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.390

Length

848 amino acids

Sequence
(BLAST)

001: MEMLGSSLLR TTTPLLRSSS SSLFPGDRPS DLLFSHASFP SRQRIGLARR VVRSPVAAVV LTERFVRTEA EEKPVWFKVQ AAVTVRRRKQ EDLKESIANQ
101: VDAFLDKMGK NVVMELVSTE IDPKTRKPKT SNRAALRGWF EKKNTKAERV VYTAEFAVDS SFGEPGAITV LNRHQSEFFL ESIVVEGFAC GPVHFACNSW
201: VQPTSVHPNN RVFFGNKPYL PSQTPAGLRE LRQQELKALK GDGNGERKLT DRIYDYDTYN DLGNPDKGIE FARTTLGGEK MPFPRRLRTG RAPTATDSHA
301: ESRVEDPLPM YVPRDERFEE GKQEMLKAGA LKAVLHNLVP LLRSLQDQLF HKIPFVTKIE ESSEGLLRYD TPDIITKDKF AWLRDDEFAR QTLAGINPVN
401: IERLQVFPPV SRLDPSVYGP PESAITEEHI TSHLNGMSVQ QALEEKKLFI LDFHDVYLPF IDRINAQDGR KAYGTRTVFF LTELGTLKPI AIELSLPPVR
501: PGDARTKRVL TPPTDATGNW LWQLAKAHVC SNDAGVHQLV NHWLRTHASV EPFTLAAHRQ LSAMHPIFKL LKPHMRYTLE VNALARQILI NGGGVIESGF
601: TPGPVCMEIS AAAYRDHWRF DQEALPADLI RRQVGMAVED KTQPHGLRLV IEDYPYATDG LLLWSAIQSW VETYVAAYYS DDEAVQSDSE LQSWYSEAHA
701: SLNFGQYPLG GYIPNRPPMM RRLVPMEGDP EYEHFRADPV KFFLSALPSL TQATTFMTVI DTLSTHSVDE EYLGERPDPY TWTGDGEMVE AFHEFAAEVR
801: RAETEIARRN ADPARRNRCG AGVLPYELMA PSSGPGITCR GVPNSVSI

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.