CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10882	Soybean	cytosol	28.02	58.76
HORVU5Hr1G055110.2	Barley	mitochondrion	22.09	56.94
Os04t0447100-01	Rice	cytosol	47.14	53.89
KRH69027	Soybean	plastid	52.53	53.05
KRG97300	Soybean	plastid	51.87	52.5
KRH47615	Soybean	nucleus	53.41	52.43
KRH21441	Soybean	cytosol	52.42	52.42
KRH06197	Soybean	nucleus	53.08	52.39
GSMUA_Achr8P22700_001	Banana	plastid	47.8	51.3
GSMUA_Achr3P07870_001	Banana	plastid	49.12	50.85
GSMUA_Achr9P16020_001	Banana	plastid	48.57	50.46
TraesCS2B01G333600.1	Wheat	plastid	50.44	50.05
TraesCS2D01G313400.1	Wheat	plastid	49.89	49.89
GSMUA_Achr10P...	Banana	cytosol	47.69	49.32
EES10882	Sorghum	plastid	49.67	48.92
TraesCS2A01G315100.2	Wheat	plastid	50.22	48.62
Zm00001d003533_P001	Maize	plastid	49.78	48.14
Os03t0179900-01	Rice	plastid	48.35	47.93
Zm00001d025524_P001	Maize	plastid	48.9	47.9
EER95400	Sorghum	mitochondrion	48.24	47.51
TraesCS4D01G294100.1	Wheat	plastid	48.13	47.51
HORVU4Hr1G076570.6	Barley	cytosol, plastid	47.8	47.49
TraesCS4A01G009400.1	Wheat	plastid	48.02	47.35
TraesCS4B01G295200.1	Wheat	plastid	48.02	47.35
KRH35534	Soybean	cytosol	22.31	45.31
KRH42646	Soybean	plastid	45.71	45.17
Zm00001d027893_P001	Maize	plastid	48.02	45.14
KRG89889	Soybean	cytosol, plastid	39.56	41.86
KRH24671	Soybean	cytosol, plastid	41.32	41.14
KRG89883	Soybean	cytosol, plastid	38.79	41.09
KRH29668	Soybean	nucleus	40.88	41.06
KRG89888	Soybean	nucleus	40.66	40.97
KRH68548	Soybean	cytosol	37.91	40.21
KRH17965	Soybean	plastid	40.44	40.09
KRH44093	Soybean	endoplasmic reticulum	37.25	40.07
KRH10050	Soybean	endoplasmic reticulum	37.69	40.02
KRH23266	Soybean	cytosol	36.15	39.83
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.33	39.83
KRH16725	Soybean	cytosol	10.11	39.83
KRH33939	Soybean	cytosol, endoplasmic reticulum	37.69	39.65
KRH18682	Soybean	cytosol, mitochondrion	39.56	39.52
KRH47522	Soybean	endoplasmic reticulum, nucleus	37.36	39.31
KRH29669	Soybean	plastid	38.9	39.29
KRH23265	Soybean	endoplasmic reticulum, nucleus	37.25	39.15
KRH44090	Soybean	endoplasmic reticulum	36.92	39.07
KRH44095	Soybean	endoplasmic reticulum	37.14	39.03
KRH44094	Soybean	endoplasmic reticulum	36.92	38.75
KRH44097	Soybean	cytosol, endoplasmic reticulum	36.92	38.71
KRH62403	Soybean	cytosol, endoplasmic reticulum	9.56	38.33
KRH47067	Soybean	endoplasmic reticulum	36.37	38.31
KRH47066	Soybean	endoplasmic reticulum, nucleus	36.15	38.3
KRH47525	Soybean	endoplasmic reticulum	36.26	38.02
KRH57987	Soybean	cytosol	10.77	37.98
KRG91271	Soybean	cytosol	35.71	37.88
KRH47069	Soybean	endoplasmic reticulum	18.9	37.8
KRH44092	Soybean	nucleus	35.38	37.57
KRH10053	Soybean	endoplasmic reticulum	35.16	37.51
KRH10051	Soybean	endoplasmic reticulum, nucleus	35.27	37.5
KRH23268	Soybean	endoplasmic reticulum	35.05	37.4
KRH13357	Soybean	endoplasmic reticulum	9.89	37.19
KRH07345	Soybean	cytosol, plastid	34.73	36.7
KRH66214	Soybean	cytosol	34.84	36.61
KRH23269	Soybean	endoplasmic reticulum	32.97	36.5
KRH30640	Soybean	cytosol	7.47	36.36
KRH47064	Soybean	endoplasmic reticulum	21.98	35.09
KRG88464	Soybean	cytosol	15.05	30.04

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100810270	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.375.10	MapMan:50.1.12
EMBL:ACUP02004653	EnsemblPlantsGene:GLYMA_07G196800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
UniProt:I1KLK0	InterPro:IPR001024	InterPro:IPR013819	EnsemblPlants:KRH50048	ProteinID:KRH50048	ProteinID:KRH50048.1
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_plant	PFAM:PF00305
PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF56	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000296E477	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:36508562..36518539

Molecular Weight (calculated)

103046.0 Da

IEP (calculated)

7.327

GRAVY (calculated)

-0.367

Length

910 amino acids

Sequence
(BLAST)

001: MTETRVNTLM VTSSGNYGML HNNKIHLNCQ FLGLGHSIKE HGRFGLVCSS SLSGGGNKMK LRVKKKGKQS SSPTMMVALN EGHEAISEES TTVKLLALVA
101: VRNSKDNNKV FANEIVNNLL TIFWPQNQTK GVVLQLVSTQ LDPRRMEAKL SKKTVLELSE DHKVDEKGRI STYKVEFIVD SDFGIPGAVT VVNGFDNEFF
201: LESITMAQNV HFACKSWVQP NKLDPEKRIF FVNKVYLPCE TPIGVKELRE KELKQLRGDG WGLRVSSDRI YDYDVYNDLG DSDKGDRFAR PTLGGQHNPY
301: PTRCRTGRPP STVDTKMESR PSDESELIYV PRDEELGDIK QEVIDQGKLM AMLKNIMPAL VDKIMGNEGV FNIDYFIKES GQSIMFNLGG AVQEFFKFDP
401: PKTFSREKSH FLLDDEFGRQ VLAAFPLGIE RLKVFPPASK LDPSKYGSVE SALKEEHIIG HIEGMSIQQA LEENKLFMLD YHDVYLPFLD RINALEERKA
501: YATTTILFLT KMGTLKPIAI QLALPTGNPN TSSKQVLTPP KDATSKWLWQ LGKAHVCSND AGVHTLVHHW LRIHACMEPL IIATHRQLSV MHPIFKLLHP
601: HMRYTLKTNA IARQTLINAE GTIETDHTPG RYCMQFSSAA YKDWWRFDME GFPADLIRRG LAVPDATQPH GIRLLIEDYP YAADGLLIWS SIKKLVRTYV
701: NHYYKNSNAV SSDNELQSWY REFINLGHPD HKNASWWPKL DIPEDLTSML TTVIWLVSAQ HAVLNFGQYP YGGYVPIRPP LMRKLIPKEE DPEYSDFVMD
801: PQRYFLSSLP SLFQASRFMA VINIGSAHSP DEEYIGQTKD LSSWSGEPEI IDAFNQFSME MKSIEMEIKR RNADPKLRNR CGVNVLPYEL LIPSSERGAT
901: GRGVPNSVTA

Best Arabidopsis Sequence Match ( AT1G17420.1 )
(BLAST)

001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI

Arabidopsis Description

LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.