CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH08499
KRH33614
KRH70165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	KRH08499	AT5G18110.1	11117257
AT3G45140.1	KRH70165	AT5G18110.1	11117257
AT3G45140.1	KRG90357	AT5G35620.1	11117257
AT3G45140.1	KRH33614	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29668	Soybean	nucleus	93.33	94.15
Solyc01g009680.2.1	Tomato	plastid	35.01	72.23
Os12t0559934-00	Rice	cytosol	15.21	71.28
PGSC0003DMT400020118	Potato	cytosol	51.42	67.82
CDY72550	Canola	cytosol	23.74	67.6
CDY61034	Canola	cytosol	32.71	66.89
VIT_06s0004g01500.t01	Wine grape	cytosol	57.11	65.99
VIT_06s0004g01480.t01	Wine grape	cytosol	56.78	65.45
CDY07409	Canola	cytosol	27.68	65.37
CDY70843	Canola	cytosol	8.97	65.08
KRH29669	Soybean	plastid	63.46	64.37
VIT_06s0004g01510.t01	Wine grape	plastid	63.35	64.26
HORVU3Hr1G047210.1	Barley	cytosol	15.21	64.06
PGSC0003DMT400081909	Potato	plastid	62.03	63.07
Solyc01g006540.2.1	Tomato	plastid	61.27	62.5
Solyc01g006560.2.1	Tomato	plastid	61.16	61.97
VIT_06s0004g01460.t01	Wine grape	plastid	40.48	61.87
KRG89883	Soybean	cytosol, plastid	57.99	61.7
VIT_06s0004g01470.t01	Wine grape	cytosol	60.94	61.68
KRG89889	Soybean	cytosol, plastid	57.22	60.81
Solyc12g011040.1.1	Tomato	nucleus, plastid	59.08	60.54
KRH18682	Soybean	cytosol, mitochondrion	59.85	60.04
CDY61881	Canola	cytosol	23.3	60.0
KRG89888	Soybean	nucleus	59.19	59.91
GSMUA_Achr3P11780_001	Banana	plastid	55.36	59.81
GSMUA_Achr9P12470_001	Banana	plastid	55.14	59.79
KRH17965	Soybean	plastid	58.97	58.71
OQU80925	Sorghum	cytosol	54.16	57.23
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	53.72	57.16
HORVU6Hr1G033600.1	Barley	plastid	55.91	57.03
Zm00001d053675_P001	Maize	plastid	56.24	56.8
TraesCS6A01G166000.1	Wheat	golgi	55.58	56.38
TraesCS6B01G193400.1	Wheat	plastid	55.47	56.27
TraesCS6D01G154600.1	Wheat	plastid	55.36	56.16
Os02t0194700-01	Rice	plasma membrane	56.24	55.51
KXG29701	Sorghum	plastid	55.69	55.51
TraesCS7D01G029400.1	Wheat	cytosol	16.08	55.47
Zm00001d015852_P004	Maize	plastid	55.14	55.32
CDX91565	Canola	plastid	53.72	54.56
CDX67920	Canola	plastid	53.72	54.31
AT3G45140.1	Thale cress	plastid	53.17	54.24
Bra003526.1-P	Field mustard	plastid	53.61	54.2
CDX79416	Canola	plastid	53.61	54.2
CDY04196	Canola	plastid	52.63	54.11
Bra004057.1-P	Field mustard	cytosol	52.52	53.87
HORVU7Hr1G050680.1	Barley	peroxisome	40.04	53.51
TraesCS4D01G347300.1	Wheat	cytosol	51.53	53.22
Bra004060.1-P	Field mustard	plastid	52.3	53.17
TraesCS7B01G145200.1	Wheat	plastid	53.94	53.12
TraesCS7A01G246200.1	Wheat	plastid	54.05	53.06
Bra022535.1-P	Field mustard	plastid	47.05	53.02
TraesCS7D01G244800.1	Wheat	plastid	54.05	53.0
Bra004059.1-P	Field mustard	plastid	50.22	53.0
TraesCS6B01G014400.1	Wheat	cytosol	34.79	52.91
CDY61036	Canola	plastid	51.42	52.87
Os08t0509100-01	Rice	nucleus	53.61	52.07
Os08t0508800-01	Rice	nucleus, plasma membrane	52.63	52.06
Zm00001d031449_P001	Maize	mitochondrion	54.27	51.88
CDY16339	Canola	plastid	43.11	51.77
TraesCS7A01G034900.1	Wheat	mitochondrion	16.52	51.54
KRH35534	Soybean	cytosol	24.84	50.67
TraesCS5A01G007900.1	Wheat	plastid	50.98	50.22
TraesCS5B01G006500.1	Wheat	plastid	50.98	50.22
TraesCS5D01G013400.1	Wheat	plastid	50.98	50.22
HORVU5Hr1G001180.1	Barley	plastid	50.66	49.73
HORVU6Hr1G000510.1	Barley	plastid	49.67	48.71
TraesCS6D01G010100.1	Wheat	plastid	49.02	47.71
KRH42646	Soybean	plastid	48.03	47.67
KRH06197	Soybean	nucleus	47.81	47.4
Os12t0559200-01	Rice	plastid	47.7	47.29
KRH47615	Soybean	nucleus	47.92	47.25
HORVU7Hr1G006320.4	Barley	plastid	47.59	46.93
CDY61880	Canola	plastid	28.01	46.46
TraesCS5D01G041100.1	Wheat	plastid	47.59	46.03
KRH69027	Soybean	plastid	45.19	45.84
KRH10882	Soybean	cytosol	21.66	45.62
TraesCS5B01G033000.1	Wheat	plastid	47.37	45.58
Bra004058.1-P	Field mustard	plastid	52.41	45.27
KRG97300	Soybean	plastid	44.31	45.05
CDY07407	Canola	cytosol, plastid	53.06	44.21
Os12t0560200-00	Rice	cytosol	4.7	43.43
KRH16725	Soybean	cytosol	10.94	43.29
KRH47522	Soybean	endoplasmic reticulum, nucleus	40.48	42.77
KRH44095	Soybean	endoplasmic reticulum	40.48	42.73
KRH10050	Soybean	endoplasmic reticulum	40.04	42.71
KRH44090	Soybean	endoplasmic reticulum	40.15	42.67
KRG91271	Soybean	cytosol	40.04	42.66
KRH33939	Soybean	cytosol, endoplasmic reticulum	40.26	42.54
KRH68548	Soybean	cytosol	39.93	42.54
KRH44094	Soybean	endoplasmic reticulum	40.26	42.45
KRH44093	Soybean	endoplasmic reticulum	39.28	42.44
KRH10051	Soybean	endoplasmic reticulum, nucleus	39.5	42.17
KRH10053	Soybean	endoplasmic reticulum	39.28	42.09
KRH23266	Soybean	cytosol	37.97	42.01
CDY70245	Canola	plastid	21.01	41.92
KRH23268	Soybean	endoplasmic reticulum	38.95	41.74
KRH47525	Soybean	endoplasmic reticulum	39.61	41.71
KRH47067	Soybean	endoplasmic reticulum	39.39	41.67
KRH47069	Soybean	endoplasmic reticulum	20.68	41.54
CDY07408	Canola	plastid	20.79	41.48
KRH44097	Soybean	cytosol, endoplasmic reticulum	39.39	41.47
KRH47066	Soybean	endoplasmic reticulum, nucleus	38.95	41.44
KRH62403	Soybean	cytosol, endoplasmic reticulum	10.28	41.41
KRH23269	Soybean	endoplasmic reticulum	37.2	41.36
KRH21441	Soybean	cytosol	41.14	41.32
KRH50048	Soybean	cytosol	41.14	41.32
KRH44092	Soybean	nucleus	38.62	41.19
KRH23265	Soybean	endoplasmic reticulum, nucleus	38.95	41.11
KRH62399	Soybean	cytosol, endoplasmic reticulum	10.61	41.1
KRH30640	Soybean	cytosol	8.32	40.64
TraesCS5A01G032800.1	Wheat	mitochondrion	37.97	40.4
KRH57987	Soybean	cytosol	11.38	40.31
KRH47064	Soybean	endoplasmic reticulum	24.62	39.47
KRH66214	Soybean	cytosol	36.54	38.57
KRH07345	Soybean	cytosol, plastid	36.1	38.33
CDY70606	Canola	plastid	16.41	37.97
KRH13357	Soybean	endoplasmic reticulum	9.85	37.19
CDY61882	Canola	plastid	15.43	36.43
KRG88464	Soybean	cytosol	16.52	33.11

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100797626	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10
Gene3D:4.10.375.10	EMBL:ACUP02007180	EnsemblPlantsGene:GLYMA_12G054700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	UniProt:I1LQG7	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	EnsemblPlants:KRH24671
ProteinID:KRH24671	ProteinID:KRH24671.1	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom
InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095
PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF65	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723
UniParc:UPI000233D885	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:3949453..3957386

Molecular Weight (calculated)

104421.0 Da

IEP (calculated)

7.644

GRAVY (calculated)

-0.480

Length

914 amino acids

Sequence
(BLAST)

001: MIKPQVYQSQ NTNQILLFLQ RPSLHSIRSS IPLWLGNKVQ RQKKLNHLVL VSRNVETNST TSSTTTTTTT TDTHTDESRV KVKAIVKVKV TAGGFFSSLR
101: LDRGIDDITD LLGKSLLLEL VSSELDPVTG LEKETLKAYA HKAGNGEESV KYEAKFEVPN DFGEVGAVLV ENEHHKEMFL ETIHLDGFPE GPIHFHCASW
201: VHSKFDNPTN RVFFSNKCYL PQETPGGLRR LRAKELSNLR GNGEGERKSF ERIYDYDIYN DIGDPDKSLE LQRPPLGGNE RPYPRRCRTG RPHSEADPLS
301: EKRSRKFYVP RDECFSEVKQ LTFSTKTLHS VLLILLPSLG KIIKEKDLAF SYFDDIDSLF SHGLDLPPEE TEKGFLGKIM PRLVKSISGD RAHVLRFETP
401: ETMSRDRFFW FRDEEFARQT VAGLNPYSIR LVTEWPLKSK LDPEKYGPPE SAITSEIINK EIGGIMSVEK AIEEKKLFML DYHDVLLPYV NKVRKLKGKT
501: LYGSRTLFFL NPEGTLRPLA IELTRPPSLS NKTGQWKQVF TPSWHSTSVW LWRLAKAHVL AHDSGYHQLV SHWLRTHCAT EPYVIATNRQ LSEMHPINKL
601: LHPHFRYTME INALAREALI NADGTIESSF APGKYALEIS SAAYALEWRF DKQALPADLI RRGIAVEDPF SPHGLKLTIQ DYPFANDGLL LWDAIKLWVT
701: DYVNHYYPEP SLVESDEELQ AWWTEIRTLG HADKKDEPWW PHLKTPKNLI GILNTIIWVT SGHHAAVNFG QYVYGGYFPN RPTIARTKMP SEDPTEEEWK
801: KFIEKPERAL LKCFPSQLQA TRVMAVLDIL STHSPDEEYI GEKMEPSWGE DPVIKASFER FRERLKKLET LIDERNGNTK LKNRNGAGIV PYELLKPFSK
901: PGVTGMGVPC SISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.