CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89883
KRG89888
KRG89889
KRH03030
KRH17965
KRH18682
KRH24412
KRH24671
KRH29394
KRH29395
KRH29668
KRH29669
KRH55033
KRH63081
KRH72326
KRH75358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	KRH24412	AT1G17880.1	15716105
AT5G35620.1	KRH29394	AT1G17880.1	15716105
AT5G35620.1	KRH29395	AT1G17880.1	15716105
AT5G35620.1	KRH75358	AT1G17880.1	15716105
AT5G35620.1	KRG89883	AT3G45140.1	11117257
AT5G35620.1	KRG89888	AT3G45140.1	11117257
AT5G35620.1	KRG89889	AT3G45140.1	11117257
AT5G35620.1	KRH17965	AT3G45140.1	11117257
AT5G35620.1	KRH18682	AT3G45140.1	11117257
AT5G35620.1	KRH24671	AT3G45140.1	11117257
AT5G35620.1	KRH29668	AT3G45140.1	11117257
AT5G35620.1	KRH29669	AT3G45140.1	11117257
AT5G35620.1	KRH03030	AT5G57870.1	21798944
AT5G35620.1	KRH55033	AT5G57870.1	21798944
AT5G35620.1	KRH63081	AT5G57870.1	21798944
AT5G35620.1	KRH72326	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33614	Soybean	cytosol	94.5	92.2
PGSC0003DMT400044186	Potato	cytosol	71.0	71.0
GSMUA_Achr4P25000_001	Banana	cytosol	68.0	70.83
VIT_05s0049g01770.t01	Wine grape	cytosol	71.0	69.61
Solyc09g090580.2.1	Tomato	nucleus	69.0	69.0
GSMUA_Achr5P12940_001	Banana	cytosol	69.5	66.51
TraesCS1D01G146500.1	Wheat	golgi	69.0	66.03
TraesCS1A01G149200.1	Wheat	cytosol	69.5	65.26
HORVU1Hr1G039260.2	Barley	cytosol	68.5	65.24
TraesCS1B01G167100.1	Wheat	cytosol	68.0	65.07
EER94108	Sorghum	cytosol	66.5	63.33
Os10t0467600-01	Rice	cytosol, plastid	65.0	63.11
AT5G35620.1	Thale cress	cytosol	60.0	60.61
Zm00001d032775_P002	Maize	cytosol, extracellular	63.5	60.48
CDY38545	Canola	cytosol	59.5	60.1
Bra039484.1-P	Field mustard	cytosol	59.5	60.1
Bra035393.1-P	Field mustard	cytosol	59.5	59.8
CDY06456	Canola	cytosol	58.0	59.79
Zm00001d014065_P001	Maize	cytosol, extracellular	64.5	59.72
CDY33686	Canola	cytosol	58.5	58.79
CDY49364	Canola	cytosol	58.5	58.5
Bra035531.1-P	Field mustard	cytosol	58.5	58.5
CDX84118	Canola	cytosol	58.0	58.0
CDX74645	Canola	cytosol	60.0	52.63
KRH21134	Soybean	cytosol	47.5	40.08
KRH11115	Soybean	cytosol	40.0	34.19
KRH70165	Soybean	cytosol	30.0	25.86
KRH08499	Soybean	cytosol	30.0	25.53

Protein Annotations

EntrezGene:100781892	MapMan:17.4.2.4.1	Gene3D:3.30.760.10	EMBL:ACUP02012601	EMBL:BT098172	UniProt:C6TKG0
EnsemblPlantsGene:GLYMA_20G085800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR023398	EnsemblPlants:KRG90357	ProteinID:KRG90357	ProteinID:KRG90357.1	PFAM:PF01652	ScanProsite:PS00813
PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS
UniParc:UPI0001B16BCA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:31984936..31988716

Molecular Weight (calculated)

22709.7 Da

IEP (calculated)

5.786

GRAVY (calculated)

-0.572

Length

200 amino acids

Sequence
(BLAST)

001: MATSEEVVAA APEAAALEAG LKHKLERKWT FWCDNQSKPK QGAAWGTSLR KVYTFDTVEE FWCLYDQVFK PSKLQINADF HLFKTGIEPK WEDPECANGG
101: KWSVTSNSGR KANLDNMWLE TMMALIGEQF EDAEDICGVV ASVRQWQDKL SLWTKTAANE AAQMSIGRKW KEIIDVNDKI TYNFHDDSRT KGASKGRYTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.