CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90357
KRH33614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	KRG90357	AT5G35620.1	15716105
AT1G17880.1	KRH33614	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	88.05	86.42
KRH24412	Soybean	endoplasmic reticulum	86.79	85.71
KRH29395	Soybean	cytosol	86.16	84.57
PGSC0003DMT400022830	Potato	cytosol	79.87	82.47
GSMUA_Achr6P08310_001	Banana	cytosol	81.76	82.28
Solyc09g010330.2.1	Tomato	nucleus	83.65	82.1
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	82.39	81.88
PGSC0003DMT400073918	Potato	cytosol	79.25	81.82
Solyc07g008720.2.1	Tomato	nucleus	83.02	81.48
GSMUA_Achr3P18580_001	Banana	cytosol	77.99	78.48
AT1G17880.1	Thale cress	mitochondrion	80.5	77.58
Zm00001d032668_P001	Maize	plastid	80.5	77.58
Zm00001d013999_P001	Maize	plastid	79.25	76.36
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	74.84	76.28
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	74.84	76.28
TraesCS1D01G156700.1	Wheat	cytosol	79.87	76.05
EER91468	Sorghum	cytosol	79.25	75.9
AT1G73230.1	Thale cress	mitochondrion	78.62	75.76
Zm00001d048526_P001	Maize	extracellular	77.36	75.46
Bra008086.1-P	Field mustard	mitochondrion	78.62	74.85
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	76.73	74.85
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	77.99	74.7
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	77.99	74.7
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	77.36	74.1
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	77.36	74.1
TraesCS1B01G175700.1	Wheat	mitochondrion	81.13	73.71
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	81.13	73.71
EER93008	Sorghum	cytosol	77.36	73.65
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	76.73	73.49
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	77.99	73.37
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.47	73.17
Os03t0109600-01	Rice	plasma membrane	79.25	72.0
CDX83885	Canola	mitochondrion	74.21	71.52
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	74.21	71.52
CDY19183	Canola	mitochondrion	77.99	70.06
TraesCS5A01G550800.1	Wheat	cytosol	77.36	69.49
TraesCSU01G127100.1	Wheat	cytosol	77.36	69.49
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	79.87	67.91
GSMUA_AchrUn_...	Banana	plastid	81.76	67.36
TraesCS4B01G385900.2	Wheat	plastid	77.99	64.92
GSMUA_Achr10P...	Banana	plastid	79.25	61.46
HORVU4Hr1G090110.2	Barley	plastid	77.36	58.57
Solyc06g050640.1.1	Tomato	mitochondrion	24.53	56.52
CDX82088	Canola	mitochondrion	76.1	56.28
CDY11119	Canola	mitochondrion	76.73	55.71
CDY65091	Canola	mitochondrion	77.36	53.48
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	81.13	47.78
Bra016579.1-P	Field mustard	cytosol	75.47	35.61
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	74.84	29.97

Protein Annotations

EntrezGene:100500678	MapMan:19.1.2.1.2	Gene3D:2.20.70.30	EMBL:ACUP02000329	EMBL:BT091624	UniProt:C6T2G5
EnsemblPlantsGene:GLYMA_01G080200	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH75358	ProteinID:KRH75358
ProteinID:KRH75358.1	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351
PANTHER:PTHR10351:SF47	SMART:SM01407	UniParc:UPI0001B1506C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:21841264..21844726

Molecular Weight (calculated)

17406.7 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.588

Length

159 amino acids

Sequence
(BLAST)

001: MDVEKLKKMA SSVRTGGKGT MRRKKKAVHK TTTTDDKRLQ STLKRIGVNA IPAIEEVNIF KDEIVIQFLN PKVQASIAAN TWVVSGSPQT KKLQDILPNI
101: IHQLGPDNLE NLKKLAEQFQ KQVPEAGDGA TAAQEDDDDA VPDLVPGETF ETAAEETKS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.