Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G149200.1 | |
| TraesCS1B01G167100.1 | |
| TraesCS1D01G146500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | TraesCS1A01G149200.1 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | TraesCS1B01G167100.1 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | TraesCS1D01G146500.1 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G127100.1 | Wheat | cytosol | 99.44 | 99.44 |
| Os03t0109600-01 | Rice | plasma membrane | 92.66 | 93.71 |
| TraesCS4B01G385900.2 | Wheat | plastid | 99.44 | 92.15 |
| EER93008 | Sorghum | cytosol | 85.31 | 90.42 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 83.62 | 87.57 |
| Zm00001d048526_P001 | Maize | extracellular | 78.53 | 85.28 |
| TraesCS1A01G159300.1 | Wheat | cytosol, nucleus, plastid | 83.62 | 84.57 |
| HORVU4Hr1G090110.2 | Barley | plastid | 98.31 | 82.86 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 73.45 | 81.25 |
| PGSC0003DMT400022830 | Potato | cytosol | 68.93 | 79.22 |
| Solyc07g008720.2.1 | Tomato | nucleus | 72.32 | 79.01 |
| Solyc09g010330.2.1 | Tomato | nucleus | 71.75 | 78.4 |
| TraesCS4A01G332100.1 | Wheat | golgi, unclear | 69.49 | 78.34 |
| PGSC0003DMT400073918 | Potato | cytosol | 67.8 | 77.92 |
| KRH29395 | Soybean | cytosol | 71.19 | 77.78 |
| KRH24412 | Soybean | endoplasmic reticulum | 70.62 | 77.64 |
| KRH75358 | Soybean | endoplasmic reticulum | 69.49 | 77.36 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 70.62 | 77.16 |
| Bra008086.1-P | Field mustard | mitochondrion | 72.32 | 76.65 |
| AT1G17880.1 | Thale cress | mitochondrion | 70.62 | 75.76 |
| AT1G73230.1 | Thale cress | mitochondrion | 70.62 | 75.76 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.62 | 75.3 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.62 | 75.3 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.06 | 75.15 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.49 | 75.0 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 65.54 | 74.36 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.54 | 74.36 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.93 | 73.49 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.36 | 72.89 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.36 | 72.89 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.67 | 72.39 |
| CDX83885 | Canola | mitochondrion | 66.1 | 70.91 |
| CDY19183 | Canola | mitochondrion | 69.49 | 69.49 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 73.45 | 60.19 |
| CDX82088 | Canola | mitochondrion | 71.19 | 58.6 |
| CDY11119 | Canola | mitochondrion | 71.19 | 57.53 |
| CDY65091 | Canola | mitochondrion | 72.32 | 55.65 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 19.77 | 50.72 |
| Bra016579.1-P | Field mustard | cytosol | 67.23 | 35.31 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 66.67 | 29.72 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G550800.1 | EnsemblPlantsGene:TraesCS5A01G550800 | Gene3D:2.20.70.30 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf |
| InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | PFAM:PF01849 | PFscan:PS51151 | SEG:seg |
| SMART:SM01407 | MapMan:19.1.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:704344835..704346403
Molecular Weight (calculated)
19319.8 Da
IEP (calculated)
5.456
GRAVY (calculated)
-0.814
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVDKLKKMA GAVRTGGKGS VRRKKKAVHK TTTTDDKRLQ STLKRVGVNT IPGIEEVNIF KDDVVIQFQN PKVQASIAAN TWVVSGTPQT KKLQDLLPTI
101: INQLGPDNLD NLRRLAEQFQ KQMPGGEAGG ASIGAAQDDD DDVPELVPGE TFEEAAEEKK EPEAKKEAEP EEKKESS
101: INQLGPDNLD NLRRLAEQFQ KQMPGGEAGG ASIGAAQDDD DDVPELVPGE TFEEAAEEKK EPEAKKEAEP EEKKESS
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Arabidopsis Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.