Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014065_P001 | |
| Zm00001d032775_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17880.1 | Zm00001d014065_P001 | AT5G35620.1 | 15716105 |
| AT1G17880.1 | Zm00001d032775_P002 | AT5G35620.1 | 15716105 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93008 | Sorghum | cytosol | 89.57 | 87.43 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 88.34 | 85.21 |
| Zm00001d032668_P001 | Maize | plastid | 83.44 | 82.42 |
| Zm00001d013999_P001 | Maize | plastid | 81.6 | 80.61 |
| Os03t0109600-01 | Rice | plasma membrane | 85.89 | 80.0 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 77.3 | 78.75 |
| TraesCSU01G127100.1 | Wheat | cytosol | 85.28 | 78.53 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 85.28 | 78.53 |
| Solyc07g008720.2.1 | Tomato | nucleus | 77.3 | 77.78 |
| KRH75358 | Soybean | endoplasmic reticulum | 75.46 | 77.36 |
| PGSC0003DMT400022830 | Potato | cytosol | 73.01 | 77.27 |
| Solyc09g010330.2.1 | Tomato | nucleus | 76.07 | 76.54 |
| PGSC0003DMT400073918 | Potato | cytosol | 71.78 | 75.97 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.46 | 75.93 |
| KRH29395 | Soybean | cytosol | 74.85 | 75.31 |
| KRH24412 | Soybean | endoplasmic reticulum | 74.23 | 75.16 |
| Zm00001d034855_P001 | Maize | extracellular | 70.55 | 72.78 |
| AT1G17880.1 | Thale cress | mitochondrion | 73.62 | 72.73 |
| TraesCS4B01G385900.2 | Wheat | plastid | 84.66 | 72.25 |
| Bra008086.1-P | Field mustard | mitochondrion | 73.62 | 71.86 |
| AT1G73230.1 | Thale cress | mitochondrion | 72.39 | 71.52 |
| Bra003851.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.55 | 70.12 |
| Bra016010.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 71.17 | 69.88 |
| CDX96457 | Canola | cytosol, mitochondrion, nucleus, plastid | 71.17 | 69.88 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.87 | 69.87 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 66.87 | 69.87 |
| CDX68236 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.55 | 69.7 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.55 | 69.28 |
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.55 | 69.28 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.71 | 68.71 |
| CDX72966 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.94 | 68.67 |
| CDX83885 | Canola | mitochondrion | 67.48 | 66.67 |
| HORVU4Hr1G090110.2 | Barley | plastid | 84.66 | 65.71 |
| CDY19183 | Canola | mitochondrion | 71.17 | 65.54 |
| GSMUA_Achr1P02000_001 | Banana | plastid | 77.3 | 58.33 |
| CDX82088 | Canola | mitochondrion | 72.39 | 54.88 |
| CDY11119 | Canola | mitochondrion | 71.78 | 53.42 |
| CDY65091 | Canola | mitochondrion | 73.62 | 52.17 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 19.63 | 46.38 |
| Bra016579.1-P | Field mustard | cytosol | 68.71 | 33.23 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 68.1 | 27.96 |
Protein Annotations
| EntrezGene:100282781 | MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | ProteinID:AQL10109.1 | UniProt:B6TBD4 | EMBL:BT066117 |
| EMBL:EU962299 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom |
| PFAM:PF01849 | PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | SMART:SM01407 | UniParc:UPI000182BED3 |
| EnsemblPlantsGene:Zm00001d048526 | EnsemblPlants:Zm00001d048526_P001 | EnsemblPlants:Zm00001d048526_T001 | : | : | : |
Description
Basic transcription factor 3
Coordinates
chr9:+:157814109..157815955
Molecular Weight (calculated)
17962.3 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.721
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVEKLKKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRIGGNT IPGIEEVNIF KDDVVIQFQN PKVQASIPAN TWVVSGVPQT KSLQDLLPSI
101: INQLGPDNLD NLKKLAEIFQ RQVPGAEAAA QDDDDVPELV QGETFEEAAE KEPQLEQDEN KES
101: INQLGPDNLD NLKKLAEIFQ RQVPGAEAAA QDDDDVPELV QGETFEEAAE KEPQLEQDEN KES
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TTTTDDKRLQ STLKRVGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGTPQT KKLQDILPQI
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS
101: ISQLGPDNLD NLKKLAEQFQ KQAPGAGDVP ATIQEEDDDD DVPDLVVGET FETPATEEAP KAAAS
Arabidopsis Description
Nascent polypeptide-associated complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.