Factsheet for Zm00001d013999_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014065_P001
Zm00001d032775_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Zm00001d014065_P001	AT5G35620.1	15716105
AT1G17880.1	Zm00001d032775_P002	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032668_P001	Maize	plastid	97.58	97.58
EER91468	Sorghum	cytosol	95.15	94.58
TraesCS1D01G156700.1	Wheat	cytosol	92.12	91.02
TraesCS1B01G175700.1	Wheat	mitochondrion	93.33	88.0
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	92.73	87.43
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	80.0	82.5
Solyc07g008720.2.1	Tomato	nucleus	80.61	82.1
Zm00001d048526_P001	Maize	extracellular	80.61	81.6
KRH29395	Soybean	cytosol	80.0	81.48
KRH24412	Soybean	endoplasmic reticulum	79.39	81.37
Solyc09g010330.2.1	Tomato	nucleus	79.39	80.86
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	79.39	80.86
PGSC0003DMT400073918	Potato	cytosol	75.15	80.52
PGSC0003DMT400022830	Potato	cytosol	75.15	80.52
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	81.82	79.88
KRH75358	Soybean	endoplasmic reticulum	76.36	79.25
AT1G17880.1	Thale cress	mitochondrion	78.18	78.18
AT1G73230.1	Thale cress	mitochondrion	78.18	78.18
Zm00001d034855_P001	Maize	extracellular	73.33	76.58
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	71.52	75.64
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	71.52	75.64
Bra008086.1-P	Field mustard	mitochondrion	75.76	74.85
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	75.15	74.7
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.15	74.7
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	73.94	74.39
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	73.33	74.23
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	74.55	74.1
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	74.55	74.1
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	73.94	73.94
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	73.33	72.89
CDX83885	Canola	mitochondrion	71.52	71.52
CDY19183	Canola	mitochondrion	75.15	70.06
GSMUA_Achr1P02000_001	Banana	plastid	81.21	62.04
CDX82088	Canola	mitochondrion	76.36	58.6
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	92.73	56.67
CDY11119	Canola	mitochondrion	74.55	56.16
CDY65091	Canola	mitochondrion	77.58	55.65
Solyc06g050640.1.1	Tomato	mitochondrion	20.0	47.83
Bra016579.1-P	Field mustard	cytosol	72.73	35.61
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	72.12	29.97

Protein Annotations

EntrezGene:100284372	MapMan:19.1.2.1.2	Gene3D:2.20.70.30	ProteinID:AQK65023.1	UniProt:B4FL49	EMBL:BT037837
EMBL:EU968047	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407	UniParc:UPI00017B6A7E
EnsemblPlantsGene:Zm00001d013999	EnsemblPlants:Zm00001d013999_P001	EnsemblPlants:Zm00001d013999_T001	SEG:seg	:	:

Description

Basic transcription factor 3

Coordinates

chr5:+:28086916..28089921

Molecular Weight (calculated)

17741.0 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.598

Length

165 amino acids

Sequence
(BLAST)

001: MNVEKLKKMA GAVRTGGKGS VRRKKKAVHK TTTTDDKRLQ STLKRIGVNS IPGIEEVNIF KDDVVIQFVN PKVQASIGAN TWVVSGTPQT KKLQDLLPSI
101: INQLGPDNLD NLRRLAEQFQ KQASGASGAE AGASAGAVQD DDDDVPELVP GETFEEAAEE KKESS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.