CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	67.58	89.16
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	66.21	87.35
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	65.3	86.67
AT1G73230.1	Thale cress	mitochondrion	63.93	84.85
CDX83885	Canola	mitochondrion	61.64	81.82
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	60.27	80.98
KRH29395	Soybean	cytosol	59.36	80.25
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	57.08	80.13
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	59.82	78.92
KRH24412	Soybean	endoplasmic reticulum	57.99	78.88
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	57.99	78.4
GSMUA_Achr6P08310_001	Banana	cytosol	56.16	77.85
Solyc07g008720.2.1	Tomato	nucleus	57.53	77.78
PGSC0003DMT400073918	Potato	cytosol	54.34	77.27
Solyc09g010330.2.1	Tomato	nucleus	57.08	77.16
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.16	76.88
KRH75358	Soybean	endoplasmic reticulum	55.71	76.73
PGSC0003DMT400022830	Potato	cytosol	53.88	76.62
Zm00001d013999_P001	Maize	plastid	56.16	74.55
Zm00001d032668_P001	Maize	plastid	55.71	73.94
CDY19183	Canola	mitochondrion	59.36	73.45
TraesCS1D01G156700.1	Wheat	cytosol	55.25	72.46
EER91468	Sorghum	cytosol	54.79	72.29
GSMUA_Achr3P18580_001	Banana	cytosol	52.05	72.15
Zm00001d048526_P001	Maize	extracellular	53.42	71.78
TraesCSU01G127100.1	Wheat	cytosol	57.53	71.19
TraesCS5A01G550800.1	Wheat	cytosol	57.53	71.19
TraesCS1B01G175700.1	Wheat	mitochondrion	56.62	70.86
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	55.71	69.71
EER93008	Sorghum	cytosol	52.97	69.46
Os03t0109600-01	Rice	plasma membrane	55.25	69.14
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	52.51	68.05
CDX82088	Canola	mitochondrion	66.67	67.91
TraesCS4B01G385900.2	Wheat	plastid	57.99	66.49
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	55.71	65.24
CDY65091	Canola	mitochondrion	68.49	65.22
GSMUA_AchrUn_...	Banana	plastid	56.16	63.73
HORVU4Hr1G090110.2	Barley	plastid	59.36	61.9
GSMUA_Achr10P...	Banana	plastid	56.16	60.0
Solyc06g050640.1.1	Tomato	mitochondrion	16.44	52.17
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	58.45	47.41
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	63.93	35.26

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	GO:A0A078FDV6	UniProt:A0A078FDV6	EnsemblPlants:CDY11119	ProteinID:CDY11119
ProteinID:CDY11119.1	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00049103001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	SMART:SM01407
UniParc:UPI0004EDECBA	SEG:seg	:	:	:	:

Description

BnaC06g23710DNascent polypeptide-associated complex subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078FDV6]

Coordinates

chrLK032009:+:409482..412353

Molecular Weight (calculated)

24079.0 Da

IEP (calculated)

10.224

GRAVY (calculated)

-0.475

Length

219 amino acids

Sequence
(BLAST)

001: MRWTLKSRIS ANRTSHLLKI AKPSASISLS FTLTYLLLRL IPYEGRTLKI ENKMNREKLM KMANTVRTGG KGTVRRKKKA VHKTNTTDDK KLQSTLKRVG
101: VNSIPGIEEV NIFKDDVVIQ FINPKVQASV AANTWAVSGT PQTKKLQDIL PQIISQLGTD NLDNLKKLAE QFQKQAPGGG ADVPATIQEE DDDDDVPELV
201: AGETFETPAA EEAAKATAP

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.