CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74645
CDX84118
CDY06456
CDY33686
CDY38545
CDY49364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	CDX74645	AT5G35620.1	15716105
AT1G17880.1	CDX84118	AT5G35620.1	15716105
AT1G17880.1	CDY06456	AT5G35620.1	15716105
AT1G17880.1	CDY33686	AT5G35620.1	15716105
AT1G17880.1	CDY38545	AT5G35620.1	15716105
AT1G17880.1	CDY49364	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83885	Canola	mitochondrion	40.81	98.18
Bra016579.1-P	Field mustard	cytosol	82.12	96.74
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	36.52	88.96
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	34.01	86.54
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	34.51	82.53
AT1G17880.1	Thale cress	mitochondrion	33.5	80.61
KRH29395	Soybean	cytosol	32.24	79.01
CDY19183	Canola	mitochondrion	35.01	78.53
KRH24412	Soybean	endoplasmic reticulum	31.74	78.26
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	32.49	78.18
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	32.49	77.71
PGSC0003DMT400022830	Potato	cytosol	29.97	77.27
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	31.49	77.16
Solyc07g008720.2.1	Tomato	nucleus	31.49	77.16
PGSC0003DMT400073918	Potato	cytosol	29.72	76.62
Solyc09g010330.2.1	Tomato	nucleus	31.23	76.54
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	31.99	76.51
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	30.48	75.62
GSMUA_Achr6P08310_001	Banana	cytosol	29.97	75.32
KRH75358	Soybean	endoplasmic reticulum	29.97	74.84
GSMUA_Achr3P18580_001	Banana	cytosol	29.47	74.05
Zm00001d013999_P001	Maize	plastid	29.97	72.12
Zm00001d032668_P001	Maize	plastid	29.72	71.52
EER91468	Sorghum	cytosol	29.72	71.08
TraesCS1D01G156700.1	Wheat	cytosol	29.47	70.06
Zm00001d048526_P001	Maize	extracellular	27.96	68.1
TraesCS1B01G175700.1	Wheat	mitochondrion	29.97	68.0
EER93008	Sorghum	cytosol	28.46	67.66
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	28.72	67.46
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	29.72	67.43
TraesCS5A01G550800.1	Wheat	cytosol	29.72	66.67
TraesCSU01G127100.1	Wheat	cytosol	29.72	66.67
Os03t0109600-01	Rice	plasma membrane	28.97	65.71
CDY11119	Canola	mitochondrion	35.26	63.93
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	29.97	63.64
GSMUA_AchrUn_...	Banana	plastid	30.73	63.21
TraesCS4B01G385900.2	Wheat	plastid	30.23	62.83
CDX82088	Canola	mitochondrion	33.0	60.93
CDY65091	Canola	mitochondrion	33.5	57.83
GSMUA_Achr10P...	Banana	plastid	29.72	57.56
HORVU4Hr1G090110.2	Barley	plastid	29.72	56.19
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	31.99	47.04
Solyc06g050640.1.1	Tomato	mitochondrion	7.81	44.93

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	Gene3D:3.40.50.720	GO:A0A078E421	EnsemblPlants:CDX96745	ProteinID:CDX96745
ProteinID:CDX96745.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0050662
EnsemblPlantsGene:GSBRNA2T00102966001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:NAD(P)-bd_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom
PFAM:PF01370	PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR43238	PANTHER:PTHR43238:SF3	SMART:SM01407
SUPFAM:SSF51735	UniParc:UPI0004EEA003	SEG:seg	:	:	:

Description

BnaA08g22880D

Coordinates

chrLK031895:+:813580..817536

Molecular Weight (calculated)

44143.0 Da

IEP (calculated)

8.035

GRAVY (calculated)

-0.288

Length

397 amino acids

Sequence
(BLAST)

001: MIRGVKVIKH LFYFQCQQRV HCSELIYFNN GGRHRIRYVN LQVSIHFRSK SALIVQSVVD FLVILKPGSF MSEKTAKIFV AGHRGLVGSA IVRKLRESGF
101: KNLLLKTHSE LDLTNQSDVE SFFATEKPAY VILGGIHANN TYPADFISAN DAEEVVVWGS GTPLREFLHV DDLADACVFL MERYSGFEHV NVGSGVEMTI
201: KELAEFVKEV VGFEGKLVWD CKTQNPNHQN LKMNREKLMK MANTVRTGGK GTVRRKKKAV HKTNTTDDKK LQSTLKRIGV NSIPAIEEVN IFKDDVVIQF
301: TNPKVRASVG ANTWVVSGSP QTKKLEDILP QILSHLGPDN MENLKKLAEQ FKKQSPGGGN VPATIQEDDD EDDDVPELVA GETFEAAAEE KVAAASS

Best Arabidopsis Sequence Match ( AT1G17890.3 )
(BLAST)

001: MKSGSFMLEK SAKIFVAGHR GLVGSAIVRK LQDQGFTNLV LRTHSELDLT SQSDVESFFA TEKPVYVILA AAKVGGIHAN NTYPADFIGV NLQIQTNVIH
101: SAYTHGVKKL LFLGSSCIYP KFAPQPIPES ALLTGPLEPT NEWYAIAKIA GIKMCQAYRL QHQWDAISGM PTNLYGQNDN FHPENSHVLP ALMRRFHEAK
201: ANNADEVVVW GSGSPLREFL HVDDLADACV FLMDQYSGFE HVNVGSGVEV TIKELAELVK EVVGFKGKLV WDTTKPDGTP RKLMDSSKLA SLGWTPKISL
301: KDGLSQTYEW YLENVVQKKQ

Arabidopsis Description

GER2Putative GDP-L-fucose synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMU0]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.