Factsheet for TraesCS1B01G175700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	TraesCS1A01G149200.1	AT5G35620.1	15716105
AT1G17880.1	TraesCS1B01G167100.1	AT5G35620.1	15716105
AT1G17880.1	TraesCS1D01G146500.1	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G156700.1	Wheat	cytosol	94.29	98.8
Zm00001d032668_P001	Maize	plastid	90.29	95.76
EER91468	Sorghum	cytosol	89.14	93.98
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	93.71	93.71
Zm00001d013999_P001	Maize	plastid	88.0	93.33
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.57	83.75
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	76.0	82.1
Solyc07g008720.2.1	Tomato	nucleus	75.43	81.48
KRH29395	Soybean	cytosol	75.43	81.48
KRH24412	Soybean	endoplasmic reticulum	74.86	81.37
KRH75358	Soybean	endoplasmic reticulum	73.71	81.13
Solyc09g010330.2.1	Tomato	nucleus	74.86	80.86
PGSC0003DMT400022830	Potato	cytosol	70.29	79.87
PGSC0003DMT400073918	Potato	cytosol	69.71	79.22
AT1G73230.1	Thale cress	mitochondrion	73.14	77.58
TraesCS4B01G385900.2	Wheat	plastid	84.57	77.49
Bra008086.1-P	Field mustard	mitochondrion	72.0	75.45
AT1G17880.1	Thale cress	mitochondrion	70.86	75.15
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.86	74.7
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	70.86	74.7
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	66.29	74.36
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	66.29	74.36
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.14	73.78
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	68.57	73.62
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	69.71	73.49
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.71	73.49
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	69.71	73.49
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	69.14	73.33
CDX83885	Canola	mitochondrion	67.43	71.52
CDY19183	Canola	mitochondrion	70.29	69.49
GSMUA_Achr1P02000_001	Banana	plastid	77.14	62.5
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	95.43	61.85
CDX82088	Canola	mitochondrion	72.57	59.07
CDY11119	Canola	mitochondrion	70.86	56.62
CDY65091	Canola	mitochondrion	73.71	56.09
Solyc06g050640.1.1	Tomato	mitochondrion	19.43	49.28
Bra016579.1-P	Field mustard	cytosol	68.57	35.61
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	68.0	29.97

Protein Annotations

EnsemblPlants:TraesCS1B01G175700.1	EnsemblPlantsGene:TraesCS1B01G175700	Gene3D:2.20.70.30	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151	SEG:seg
SMART:SM01407	MapMan:19.1.2.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:317320458..317321956

Molecular Weight (calculated)

18893.6 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.554

Length

175 amino acids

Sequence
(BLAST)

001: MSQKRLTLMN VEKLKKMAGA VRTGGKGSMR RKKKAVHKTT TTDDKRLQST LKRVGVNTIP GIEEVNIFKD DVVIQFLNPK VQASIGANTW VVSGTPQTKK
101: LQDLLPSIIN QLGPDNLDNL RRLAEQFQKQ VPGGAAGIEA GASAGAAQAD DDDDVPELVP GETFEEAAEE KKAES

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.