Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025940.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 86.67 | 86.14 |
| CDY26207 | Canola | cytosol, mitochondrion, nucleus, plastid | 86.67 | 86.14 |
| Bra031007.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 81.21 | 85.9 |
| CDY21729 | Canola | cytosol, mitochondrion, nucleus, plastid | 81.21 | 85.9 |
| CDX81852 | Canola | cytosol, mitochondrion, nucleus, plastid | 84.24 | 85.28 |
| KRH24412 | Soybean | endoplasmic reticulum | 81.82 | 83.85 |
| KRH29395 | Soybean | cytosol | 81.82 | 83.33 |
| KRH29394 | Soybean | cytosol, mitochondrion, nucleus, plastid | 81.82 | 83.33 |
| AT1G73230.1 | Thale cress | mitochondrion | 82.42 | 82.42 |
| CDY19183 | Canola | mitochondrion | 86.67 | 80.79 |
| VIT_17s0053g00620.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 78.18 | 80.62 |
| PGSC0003DMT400073918 | Potato | cytosol | 75.15 | 80.52 |
| PGSC0003DMT400022830 | Potato | cytosol | 75.15 | 80.52 |
| KRH75358 | Soybean | endoplasmic reticulum | 77.58 | 80.5 |
| Solyc07g008720.2.1 | Tomato | nucleus | 78.79 | 80.25 |
| CDX83885 | Canola | mitochondrion | 80.0 | 80.0 |
| GSMUA_Achr6P08310_001 | Banana | cytosol | 76.36 | 79.75 |
| Solyc09g010330.2.1 | Tomato | nucleus | 78.18 | 79.63 |
| Zm00001d013999_P001 | Maize | plastid | 78.18 | 78.18 |
| Zm00001d032668_P001 | Maize | plastid | 76.36 | 76.36 |
| GSMUA_Achr3P18580_001 | Banana | cytosol | 72.12 | 75.32 |
| EER91468 | Sorghum | cytosol | 75.76 | 75.3 |
| TraesCS1D01G156700.1 | Wheat | cytosol | 74.55 | 73.65 |
| Zm00001d048526_P001 | Maize | extracellular | 72.73 | 73.62 |
| EER93008 | Sorghum | cytosol | 73.33 | 72.46 |
| TraesCS1A01G159300.1 | Wheat | cytosol, nucleus, plastid | 75.15 | 70.86 |
| TraesCS1B01G175700.1 | Wheat | mitochondrion | 75.15 | 70.86 |
| TraesCS5A01G550800.1 | Wheat | cytosol | 75.76 | 70.62 |
| TraesCSU01G127100.1 | Wheat | cytosol | 75.76 | 70.62 |
| Zm00001d027318_P001 | Maize | extracellular, mitochondrion, plastid | 72.12 | 70.41 |
| Os03t0109600-01 | Rice | plasma membrane | 73.33 | 69.14 |
| GSMUA_Achr6P16240_001 | Banana | golgi, vacuole | 76.36 | 67.38 |
| TraesCS4B01G385900.2 | Wheat | plastid | 76.36 | 65.97 |
| GSMUA_AchrUn_... | Banana | plastid | 75.76 | 64.77 |
| GSMUA_Achr10P... | Banana | plastid | 74.55 | 60.0 |
| HORVU4Hr1G090110.2 | Barley | plastid | 75.15 | 59.05 |
| Solyc06g050640.1.1 | Tomato | mitochondrion | 21.82 | 52.17 |
| HORVU1Hr1G042270.1 | Barley | nucleus, peroxisome, plastid | 75.15 | 45.93 |
| Bra016579.1-P | Field mustard | cytosol | 81.21 | 39.76 |
| CDX96745 | Canola | cytosol, golgi, mitochondrion, plastid | 80.61 | 33.5 |
Protein Annotations
| MapMan:19.1.2.1.2 | Gene3D:2.20.70.30 | EntrezGene:838367 | ProteinID:AAF97268.1 | ProteinID:AEE29647.1 | EMBL:AF332407 |
| EMBL:AJ242970 | ArrayExpress:AT1G17880 | EnsemblPlantsGene:AT1G17880 | RefSeq:AT1G17880 | TAIR:AT1G17880 | RefSeq:AT1G17880-TAIR-G |
| EnsemblPlants:AT1G17880.1 | TAIR:AT1G17880.1 | EMBL:AY045793 | EMBL:AY057667 | EMBL:AY079361 | EMBL:AY084522 |
| Unigene:At.490 | Symbol:BTF3 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | InterPro:IPR002715 | InterPro:IPR038187 | InterPro:NAC_A/B_dom_sf |
| RefSeq:NP_173230.1 | InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51151 | PANTHER:PTHR10351 | PANTHER:PTHR10351:SF47 | UniProt:Q9SMW7 | SMART:SM01407 |
| UniParc:UPI000005EB61 | SEG:seg | : | : | : | : |
Description
BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
Coordinates
chr1:-:6152384..6153982
Molecular Weight (calculated)
17947.3 Da
IEP (calculated)
7.543
GRAVY (calculated)
-0.590
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.