Factsheet for Os03t0109600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0467600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	Os10t0467600-01	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G550800.1	Wheat	cytosol	93.71	92.66
TraesCSU01G127100.1	Wheat	cytosol	93.14	92.09
EER93008	Sorghum	cytosol	85.71	89.82
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	84.0	86.98
Zm00001d048526_P001	Maize	extracellular	80.0	85.89
TraesCS4B01G385900.2	Wheat	plastid	93.14	85.34
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	73.71	80.62
KRH75358	Soybean	endoplasmic reticulum	72.0	79.25
Solyc09g010330.2.1	Tomato	nucleus	73.14	79.01
Solyc07g008720.2.1	Tomato	nucleus	72.57	78.4
PGSC0003DMT400022830	Potato	cytosol	68.57	77.92
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	72.0	77.78
HORVU4Hr1G090110.2	Barley	plastid	93.14	77.62
PGSC0003DMT400073918	Potato	cytosol	68.0	77.27
KRH29395	Soybean	cytosol	71.43	77.16
KRH24412	Soybean	endoplasmic reticulum	70.86	77.02
Os03t0851000-01	Rice	cytosol, mitochondrion, nucleus, peroxisome	68.0	75.32
AT1G73230.1	Thale cress	mitochondrion	70.29	74.55
Bra008086.1-P	Field mustard	mitochondrion	70.86	74.25
AT1G17880.1	Thale cress	mitochondrion	69.14	73.33
Bra016010.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.14	72.89
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	69.14	72.89
Bra003851.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.0	72.56
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	64.57	72.44
Bra031007.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.57	72.44
Bra025940.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.57	72.29
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	68.57	72.29
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	68.0	72.12
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	68.0	71.69
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	65.71	70.55
CDX83885	Canola	mitochondrion	65.14	69.09
CDY19183	Canola	mitochondrion	68.57	67.8
GSMUA_Achr1P02000_001	Banana	plastid	74.29	60.19
CDX82088	Canola	mitochondrion	70.29	57.21
CDY11119	Canola	mitochondrion	69.14	55.25
CDY65091	Canola	mitochondrion	72.0	54.78
Solyc06g050640.1.1	Tomato	mitochondrion	19.43	49.28
Bra016579.1-P	Field mustard	cytosol	66.29	34.42
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	65.71	28.97

Protein Annotations

MapMan:19.1.2.1.2	Gene3D:2.20.70.30	EntrezGene:4331347	EntrezGene:4348929	ProteinID:AAM91875.1	ProteinID:AAP54321.1
ProteinID:ABB47797.1	ProteinID:ABF93577.1	EMBL:AK121478	EMBL:AK121674	EMBL:AY224525	ProteinID:BAF10623.1
ProteinID:BAF26797.1	ProteinID:BAS81908.1	ProteinID:BAS81909.1	ProteinID:BAT11355.1	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002715
InterPro:IPR038187	EMBL:KF017618	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	EnsemblPlantsGene:Os03g0109600	EnsemblPlants:Os03t0109600-01
PFAM:PF01849	PFscan:PS51151	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	UniProt:Q84VF8	SMART:SM01407
UniParc:UPI000005F8F8	RefSeq:XP_015612873.1	RefSeq:XP_015627819.1	SEG:seg	:	:

Description

BTF3a RNA pol B, BTF3a RNA polymerase B, Transcription factor BTF3aSimilar to Transcription factor homolog BTF3-like protein. (Os03t0109600-01);Similar to transcription factor BTF3. (Os03t0109600-02);Similar to transcription factor BTF3. (Os03t0109600-03)

Coordinates

chr3:-:560380..562685

Molecular Weight (calculated)

19208.6 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.858

Length

175 amino acids

Sequence
(BLAST)

001: MNVDKLKKMA GAVRTGGKGS MRRKKKAVHK TTTTDDKRLQ STLKRVGVNN IPGIEEVNIF KDDVVIQFQN PKVQASIGAN TWVVSGTPQT KKLQDLLPTI
101: INQLGPDNLD NLRRLAEQFQ KQVPGAEAGA SAGNAQDDDD DVPELVPGET FEEAAEEKEP EEKKEAEVEE KKESS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.