CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74645
CDX84118
CDY06456
CDY33686
CDY38545
CDY49364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17880.1	CDX74645	AT5G35620.1	15716105
AT1G17880.1	CDX84118	AT5G35620.1	15716105
AT1G17880.1	CDY06456	AT5G35620.1	15716105
AT1G17880.1	CDY33686	AT5G35620.1	15716105
AT1G17880.1	CDY38545	AT5G35620.1	15716105
AT1G17880.1	CDY49364	AT5G35620.1	15716105

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81852	Canola	cytosol, mitochondrion, nucleus, plastid	87.27	88.34
CDY21729	Canola	cytosol, mitochondrion, nucleus, plastid	81.21	85.9
CDY26207	Canola	cytosol, mitochondrion, nucleus, plastid	82.42	81.93
AT1G17880.1	Thale cress	mitochondrion	80.0	80.0
CDX68236	Canola	cytosol, mitochondrion, nucleus, plastid	78.79	78.79
KRH29395	Soybean	cytosol	76.97	78.4
CDX96457	Canola	cytosol, mitochondrion, nucleus, plastid	78.79	78.31
CDY19183	Canola	mitochondrion	83.64	77.97
KRH24412	Soybean	endoplasmic reticulum	75.76	77.64
CDX72966	Canola	cytosol, mitochondrion, nucleus, plastid	77.58	77.11
PGSC0003DMT400022830	Potato	cytosol	71.52	76.62
Solyc07g008720.2.1	Tomato	nucleus	75.15	76.54
KRH29394	Soybean	cytosol, mitochondrion, nucleus, plastid	75.15	76.54
PGSC0003DMT400073918	Potato	cytosol	70.91	75.97
Solyc09g010330.2.1	Tomato	nucleus	74.55	75.93
VIT_17s0053g00620.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	72.73	75.0
GSMUA_Achr6P08310_001	Banana	cytosol	71.52	74.68
KRH75358	Soybean	endoplasmic reticulum	71.52	74.21
GSMUA_Achr3P18580_001	Banana	cytosol	70.3	73.42
Zm00001d013999_P001	Maize	plastid	71.52	71.52
Zm00001d032668_P001	Maize	plastid	70.91	70.91
EER91468	Sorghum	cytosol	70.91	70.48
TraesCS1D01G156700.1	Wheat	cytosol	70.3	69.46
Zm00001d048526_P001	Maize	extracellular	66.67	67.48
TraesCS1B01G175700.1	Wheat	mitochondrion	71.52	67.43
EER93008	Sorghum	cytosol	67.88	67.07
Zm00001d027318_P001	Maize	extracellular, mitochondrion, plastid	68.48	66.86
TraesCS1A01G159300.1	Wheat	cytosol, nucleus, plastid	70.91	66.86
TraesCS5A01G550800.1	Wheat	cytosol	70.91	66.1
TraesCSU01G127100.1	Wheat	cytosol	70.91	66.1
Os03t0109600-01	Rice	plasma membrane	69.09	65.14
GSMUA_Achr6P16240_001	Banana	golgi, vacuole	71.52	63.1
TraesCS4B01G385900.2	Wheat	plastid	71.52	61.78
CDY11119	Canola	mitochondrion	81.82	61.64
GSMUA_AchrUn_...	Banana	plastid	71.52	61.14
CDX82088	Canola	mitochondrion	77.58	59.53
CDY65091	Canola	mitochondrion	78.79	56.52
GSMUA_Achr10P...	Banana	plastid	69.7	56.1
HORVU4Hr1G090110.2	Barley	plastid	70.91	55.71
Bra016579.1-P	Field mustard	cytosol	98.79	48.37
HORVU1Hr1G042270.1	Barley	nucleus, peroxisome, plastid	71.52	43.7
Solyc06g050640.1.1	Tomato	mitochondrion	18.18	43.48
CDX96745	Canola	cytosol, golgi, mitochondrion, plastid	98.18	40.81

Protein Annotations

EnsemblPlants:CDX83885	EnsemblPlantsGene:GSBRNA2T00139658001	Gene3D:2.20.70.30	GO:A0A078D3Z4	InterPro:IPR002715	InterPro:IPR038187
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PANTHER:PTHR10351	PANTHER:PTHR10351:SF47	PFAM:PF01849	PFscan:PS51151
ProteinID:CDX83885	ProteinID:CDX83885.1	SEG:seg	SMART:SM01407	UniParc:UPI0001B63900	MapMan:19.1.2.1.2

Description

BnaC08g17600D

Coordinates

chrLK031834:+:979985..981683

Molecular Weight (calculated)

17911.2 Da

IEP (calculated)

6.555

GRAVY (calculated)

-0.642

Length

165 amino acids

Sequence
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKKLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFTN PKVQAAVGAN TWAVSGSPQT KKLEDILPQI
101: LSHLGPDNME NLKKLAEQFK KQSPGGGNVP ATIQEDDDED DDVPELVAGE TFEAAAEEKV AAASS

Best Arabidopsis Sequence Match ( AT1G17880.1 )
(BLAST)

001: MNREKLMKMA NTVRTGGKGT VRRKKKAVHK TNTTDDKRLQ STLKRIGVNS IPAIEEVNIF KDDVVIQFIN PKVQASIAAN TWVVSGSPQT KKLQDILPQI
101: ISQLGPDNMD NLKKLAEQFQ KQASGEGNAA SATIQEEDDD DVPELVGETF ETAAEEKAPA AAASS

Arabidopsis Description

BTF3Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.