CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67920
CDX79416
CDX81852
CDX83885
CDX91565
CDX96745
CDY02774
CDY04196
CDY07407
CDY07408
CDY07409
CDY16339
CDY19183
CDY21729
CDY26207
CDY32742
CDY61034
CDY61036
CDY61880
CDY61881
CDY61882
CDY70245
CDY70606
CDY70843
CDY72550

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	CDX81852	AT1G17880.1	15716105
AT5G35620.1	CDX83885	AT1G17880.1	15716105
AT5G35620.1	CDX96745	AT1G17880.1	15716105
AT5G35620.1	CDY19183	AT1G17880.1	15716105
AT5G35620.1	CDY21729	AT1G17880.1	15716105
AT5G35620.1	CDY26207	AT1G17880.1	15716105
AT5G35620.1	CDX67920	AT3G45140.1	11117257
AT5G35620.1	CDX79416	AT3G45140.1	11117257
AT5G35620.1	CDX91565	AT3G45140.1	11117257
AT5G35620.1	CDY04196	AT3G45140.1	11117257
AT5G35620.1	CDY07407	AT3G45140.1	11117257
AT5G35620.1	CDY07408	AT3G45140.1	11117257
AT5G35620.1	CDY07409	AT3G45140.1	11117257
AT5G35620.1	CDY16339	AT3G45140.1	11117257
AT5G35620.1	CDY61034	AT3G45140.1	11117257
AT5G35620.1	CDY61036	AT3G45140.1	11117257
AT5G35620.1	CDY61880	AT3G45140.1	11117257
AT5G35620.1	CDY61881	AT3G45140.1	11117257
AT5G35620.1	CDY61882	AT3G45140.1	11117257
AT5G35620.1	CDY70245	AT3G45140.1	11117257
AT5G35620.1	CDY70606	AT3G45140.1	11117257
AT5G35620.1	CDY70843	AT3G45140.1	11117257
AT5G35620.1	CDY72550	AT3G45140.1	11117257
AT5G35620.1	CDY02774	AT5G57870.1	21798944
AT5G35620.1	CDY32742	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039484.1-P	Field mustard	cytosol	99.49	99.49
CDY33686	Canola	cytosol	90.4	89.95
AT5G35620.1	Thale cress	cytosol	84.85	84.85
CDY06456	Canola	cytosol	82.32	84.02
CDY49364	Canola	cytosol	81.31	80.5
CDX84118	Canola	cytosol	80.3	79.5
CDX74645	Canola	cytosol	90.4	78.51
Solyc09g090580.2.1	Tomato	nucleus	67.68	67.0
VIT_05s0049g01770.t01	Wine grape	cytosol	67.68	65.69
GSMUA_Achr4P25000_001	Banana	cytosol	63.13	65.1
PGSC0003DMT400044186	Potato	cytosol	65.15	64.5
Os10t0467600-01	Rice	cytosol, plastid	63.13	60.68
EER94108	Sorghum	cytosol	63.64	60.0
KRG90357	Soybean	endoplasmic reticulum	60.1	59.5
TraesCS1B01G167100.1	Wheat	cytosol	62.63	59.33
Zm00001d032775_P002	Maize	cytosol, extracellular	62.63	59.05
KRH33614	Soybean	cytosol	60.61	58.54
TraesCS1D01G146500.1	Wheat	golgi	61.62	58.37
HORVU1Hr1G039260.2	Barley	cytosol	61.62	58.1
Zm00001d014065_P001	Maize	cytosol, extracellular	63.13	57.87
TraesCS1A01G149200.1	Wheat	cytosol	61.62	57.28
GSMUA_Achr5P12940_001	Banana	cytosol	60.1	56.94
CDX90426	Canola	cytosol	21.72	46.74
CDY01513	Canola	extracellular	21.72	45.26
CDX78824	Canola	cytosol	43.94	38.16
CDY61674	Canola	cytosol	43.43	37.72
CDX76547	Canola	cytosol	44.44	37.61
CDY08883	Canola	cytosol	43.43	36.75
CDY44305	Canola	cytosol	40.4	32.79
CDX99836	Canola	cytosol	40.91	32.66
CDX94676	Canola	cytosol	39.9	32.11
CDY48345	Canola	cytosol	38.89	31.05
CDY38487	Canola	cytosol	27.78	25.7
CDX78777	Canola	cytosol	27.78	25.23
CDX70795	Canola	cytosol	27.27	24.77
CDY02645	Canola	cytosol	26.77	23.66
CDY53257	Canola	cytosol	26.77	23.66
CDY49143	Canola	cytosol	26.77	23.66
CDY45630	Canola	cytosol	26.77	23.66

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	GO:A0A078HJC6	UniProt:A0A078HJC6	EnsemblPlants:CDY38545	ProteinID:CDY38545
ProteinID:CDY38545.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00066205001	InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0001CAE94F	:

Description

BnaA05g12740DBnaA05g12740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJC6]

Coordinates

chrLK032426:-:6637..8175

Molecular Weight (calculated)

22465.6 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.498

Length

198 amino acids

Sequence
(BLAST)

001: MATEDVNEAL GAAEVPIEST TEKQPHKLER KWCFWFDNQS KPKQGAAWGA SLRKASTFDT VEDFWGLHET IFIPSKLTPN ADIHLFKAGV EPKWEDPECA
101: HGGKWTFVVT NNRKQALDKA WLETLMALIG EQFDEADEIC GVVASVRLKQ DKLSLWTRTK SNEAVLMGIG KKWKALLDVT DKITFTNHDD SRRSRFTV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.