Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18040.1 | CDX92291 | AT4G01580.1 | 21798944 |
| AT4G18040.1 | CDX99294 | AT4G01580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021026.1-P | Field mustard | cytosol | 99.15 | 99.15 |
| CDY08883 | Canola | cytosol | 97.86 | 97.86 |
| CDY01513 | Canola | extracellular | 38.03 | 93.68 |
| CDX90426 | Canola | cytosol | 35.9 | 91.3 |
| AT4G18040.1 | Thale cress | cytosol | 88.46 | 88.09 |
| CDY61674 | Canola | cytosol | 84.19 | 86.4 |
| CDX78824 | Canola | cytosol | 83.76 | 85.96 |
| KRH21134 | Soybean | cytosol | 64.1 | 63.29 |
| VIT_10s0003g02250.t01 | Wine grape | cytosol | 61.54 | 61.02 |
| Zm00001d041682_P001 | Maize | cytosol, extracellular | 56.41 | 60.55 |
| EES02138 | Sorghum | cytosol | 55.98 | 59.55 |
| Solyc02g021550.2.1 | Tomato | cytosol | 47.01 | 59.46 |
| Zm00001d041973_P001 | Maize | cytosol | 55.56 | 59.09 |
| Os01t0970400-01 | Rice | cytosol | 56.41 | 58.15 |
| TraesCS3D01G527800.1 | Wheat | cytosol, golgi | 52.99 | 57.67 |
| HORVU3Hr1G113940.2 | Barley | cytosol | 52.99 | 57.67 |
| TraesCS3B01G591300.1 | Wheat | cytosol | 52.99 | 57.67 |
| TraesCS3A01G521500.1 | Wheat | cytosol | 52.99 | 57.67 |
| Solyc03g005870.2.1 | Tomato | cytosol, nucleus | 56.84 | 57.58 |
| PGSC0003DMT400034911 | Potato | cytosol | 55.56 | 56.28 |
| GSMUA_Achr3P02580_001 | Banana | cytosol | 54.7 | 55.9 |
| KRH11115 | Soybean | cytosol | 52.56 | 52.56 |
| GSMUA_Achr4P12820_001 | Banana | cytosol | 54.27 | 51.63 |
| CDY44305 | Canola | cytosol | 53.42 | 51.23 |
| CDX94676 | Canola | cytosol | 53.85 | 51.22 |
| CDX99836 | Canola | cytosol | 53.85 | 50.81 |
| CDY48345 | Canola | cytosol | 52.56 | 49.6 |
| CDY06456 | Canola | cytosol | 38.46 | 46.39 |
| CDY49364 | Canola | cytosol | 38.46 | 45.0 |
| CDX84118 | Canola | cytosol | 38.46 | 45.0 |
| CDY38545 | Canola | cytosol | 37.61 | 44.44 |
| CDY33686 | Canola | cytosol | 36.32 | 42.71 |
| CDX74645 | Canola | cytosol | 36.32 | 37.28 |
| CDX70795 | Canola | cytosol | 24.36 | 26.15 |
| CDY38487 | Canola | cytosol | 23.08 | 25.23 |
| CDX78777 | Canola | cytosol | 23.5 | 25.23 |
| CDY02645 | Canola | cytosol | 23.93 | 25.0 |
| CDY53257 | Canola | cytosol | 23.93 | 25.0 |
| CDY49143 | Canola | cytosol | 23.93 | 25.0 |
| CDY45630 | Canola | cytosol | 23.93 | 25.0 |
Protein Annotations
| MapMan:17.4.2.3.1 | Gene3D:3.30.760.10 | GO:A0A078CIJ4 | EnsemblPlants:CDX76547 | ProteinID:CDX76547 | ProteinID:CDX76547.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00126982001 |
| InterPro:IPR023398 | PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 |
| InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI0004EE8B53 | SEG:seg | : |
Description
BnaA08g08530D
Coordinates
chrLK031807:+:1995240..1997039
Molecular Weight (calculated)
26132.1 Da
IEP (calculated)
4.667
GRAVY (calculated)
-0.648
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEDTSKPV VVAEEANPNP TDHPIDRYHE EGDDAEEGEI AGGEGDGDES SKSAVPQSHP LEHSWTFWFD NPSVKLKQAT WGSSLRSVFT FATVEEFWSL
101: FNNMKGPSKL AGGADFYCFK HNIEPKWEDP ICANGGKWTM NFPKEKSDKP WLYTLLALIG EQFDHGDEIC GAVVNVRGKQ ERISIWTKNA SNEAAQVSIG
201: KQWKEFIDYN NSIGFIIHED AKKLDRGAKS AYTA
101: FNNMKGPSKL AGGADFYCFK HNIEPKWEDP ICANGGKWTM NFPKEKSDKP WLYTLLALIG EQFDHGDEIC GAVVNVRGKQ ERISIWTKNA SNEAAQVSIG
201: KQWKEFIDYN NSIGFIIHED AKKLDRGAKS AYTA
001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
Arabidopsis Description
EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.