CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67920
CDX79416
CDX91565
CDY02774
CDY04196
CDY07407
CDY07408
CDY07409
CDY16339
CDY32742
CDY61034
CDY61036
CDY61880
CDY61881
CDY61882
CDY70245
CDY70606
CDY70843
CDY72550

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	CDX67920	AT3G45140.1	11117257
AT5G18110.1	CDX79416	AT3G45140.1	11117257
AT5G18110.1	CDX91565	AT3G45140.1	11117257
AT5G18110.1	CDY04196	AT3G45140.1	11117257
AT5G18110.1	CDY07407	AT3G45140.1	11117257
AT5G18110.1	CDY07408	AT3G45140.1	11117257
AT5G18110.1	CDY07409	AT3G45140.1	11117257
AT5G18110.1	CDY16339	AT3G45140.1	11117257
AT5G18110.1	CDY61034	AT3G45140.1	11117257
AT5G18110.1	CDY61036	AT3G45140.1	11117257
AT5G18110.1	CDY61880	AT3G45140.1	11117257
AT5G18110.1	CDY61881	AT3G45140.1	11117257
AT5G18110.1	CDY61882	AT3G45140.1	11117257
AT5G18110.1	CDY70245	AT3G45140.1	11117257
AT5G18110.1	CDY70606	AT3G45140.1	11117257
AT5G18110.1	CDY70843	AT3G45140.1	11117257
AT5G18110.1	CDY72550	AT3G45140.1	11117257
AT5G18110.1	CDY02774	AT5G57870.1	21798944
AT5G18110.1	CDY32742	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49143	Canola	cytosol	99.55	99.55
CDY53257	Canola	cytosol	99.55	99.55
Bra023664.1-P	Field mustard	cytosol	99.11	99.11
CDY02645	Canola	cytosol	99.11	99.11
AT5G18110.1	Thale cress	cytosol	85.27	86.43
CDX70795	Canola	cytosol	79.02	81.19
CDY38487	Canola	cytosol	77.23	80.84
CDX78777	Canola	cytosol	78.12	80.28
GSMUA_Achr4P11110_001	Banana	cytosol	70.98	70.35
PGSC0003DMT400060836	Potato	cytosol	69.64	69.96
VIT_08s0007g07290.t01	Wine grape	cytosol	70.09	69.78
KRH70165	Soybean	cytosol	71.88	69.4
Solyc10g080660.1.1	Tomato	cytosol, nucleus	68.3	68.61
KRH08499	Soybean	cytosol	71.88	68.51
GSMUA_Achr3P29580_001	Banana	cytosol	68.3	67.7
Os03t0262400-01	Rice	cytosol	66.52	65.64
Zm00001d028515_P001	Maize	cytosol	66.96	65.5
EER92511	Sorghum	cytosol	66.52	65.07
TraesCS4A01G087900.1	Wheat	cytosol	66.96	64.66
TraesCS4D01G216800.1	Wheat	cytosol	66.96	64.66
HORVU4Hr1G061500.4	Barley	cytosol	66.96	64.66
TraesCS4B01G216300.1	Wheat	cytosol	66.52	64.22
HORVU2Hr1G094490.1	Barley	plastid	34.82	47.56
CDX84118	Canola	cytosol	25.45	28.5
CDY49364	Canola	cytosol	25.45	28.5
CDY06456	Canola	cytosol	24.55	28.35
CDY01513	Canola	extracellular	11.61	27.37
CDY38545	Canola	cytosol	23.66	26.77
CDY61674	Canola	cytosol	26.79	26.32
CDX78824	Canola	cytosol	26.34	25.88
CDY33686	Canola	cytosol	22.77	25.63
CDX90426	Canola	cytosol	10.27	25.0
CDY08883	Canola	cytosol	25.89	24.79
CDX76547	Canola	cytosol	25.0	23.93
CDX94676	Canola	cytosol	25.45	23.17
CDY44305	Canola	cytosol	25.0	22.95
CDX74645	Canola	cytosol	23.21	22.81
CDX99836	Canola	cytosol	23.66	21.37
CDY48345	Canola	cytosol	23.66	21.37

Protein Annotations

MapMan:17.4.2.6	Gene3D:3.30.760.10	GO:A0A078I489	UniProt:A0A078I489	EnsemblPlants:CDY45630	ProteinID:CDY45630
ProteinID:CDY45630.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00082369001	InterPro:IPR023398	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0004EE19BB	:

Description

BnaCnng13380DBnaCnng13380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I489]

Coordinates

chrLK032630:+:203475..205261

Molecular Weight (calculated)

26018.5 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.598

Length

224 amino acids

Sequence
(BLAST)

001: MEITERRDDE IRDAKESANI DNIKSQYVTD SFSDERYSLE LKDGLHPLRY KFAIWYTRRT PGVRSQTSYE DNIKKIVEFS TVEGFWASYC HLARSSLLPN
101: PTDLHFFKDG IRPLWEDGAN CNGGKWIIRF SKVVSARFWE DLLLALVGDQ LDDAENICGA VLSVRINEDI ISVWNRNASD HQAVMGLRDS IKRHLKLPHA
201: YVMEYKPHDA SLRDNSSYRN TWRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.