CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY49861

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57870.1	CDY49861	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32742	Canola	plastid	96.76	97.01
AT5G57870.1	Thale cress	plastid	86.4	85.51
GSMUA_Achr4P06000_001	Banana	cytosol	3.5	65.85
VIT_11s0037g00490.t01	Wine grape	plastid	64.12	62.34
CDY69274	Canola	cytosol, mitochondrion	26.04	61.47
Solyc07g005810.2.1	Tomato	plastid	61.53	61.45
CDY28203	Canola	cytosol	40.16	60.67
KRH55033	Soybean	endoplasmic reticulum	60.75	60.52
PGSC0003DMT400029102	Potato	cytosol, plastid	61.14	60.51
KRH63081	Soybean	endoplasmic reticulum	60.36	60.21
Solyc12g009960.1.1	Tomato	nucleus	59.72	59.64
CDY39236	Canola	cytosol	56.99	59.54
PGSC0003DMT400020464	Potato	cytosol	59.59	59.51
KRH72326	Soybean	endoplasmic reticulum	60.36	59.44
KRH03030	Soybean	endoplasmic reticulum	60.36	59.06
CDY28211	Canola	mitochondrion	35.75	58.47
CDX72262	Canola	cytosol	56.48	58.45
CDX68687	Canola	plastid	56.61	58.42
GSMUA_Achr9P22750_001	Banana	plastid	53.63	55.65
GSMUA_Achr4P05990_001	Banana	cytosol	10.49	55.1
EES12452	Sorghum	cytosol	55.57	54.24
Zm00001d003147_P001	Maize	plastid	55.18	54.2
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.66	53.91
Zm00001d025777_P007	Maize	plastid	54.79	53.89
Os02t0611500-01	Rice	cytosol	53.5	52.95
HORVU2Hr1G086240.1	Barley	cytosol	51.42	52.72
GSMUA_AchrUn_...	Banana	cytosol	50.91	52.68
TraesCS2B01G373600.1	Wheat	cytosol	53.24	52.09
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	52.98	51.9
TraesCS2A01G354900.1	Wheat	cytosol	53.11	51.9
Os04t0499300-01	Rice	plastid	51.81	49.63
GSMUA_Achr3P28040_001	Banana	cytosol	27.07	46.34
Solyc07g005780.1.1	Tomato	cytosol	25.26	43.33
GSMUA_Achr4P05970_001	Banana	cytosol	8.03	41.06
GSMUA_Achr4P12750_001	Banana	cytosol	56.09	37.33
HORVU6Hr1G023180.1	Barley	cytosol	13.6	35.59
CDX89056	Canola	cytosol	19.43	25.55
CDX98293	Canola	cytosol	18.91	20.45
Os06t0520600-01	Rice	extracellular	18.39	19.97
CDY42674	Canola	plastid	23.45	11.4
CDX89055	Canola	nucleus	10.36	8.81

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078EQ19	InterPro:ARM-type_fold	EnsemblPlants:CDY02774	ProteinID:CDY02774
ProteinID:CDY02774.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00114946001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0004EC4D7D	SEG:seg	:	:

Description

BnaC02g11150D

Coordinates

chrLK031937:+:379423..383534

Molecular Weight (calculated)

84437.2 Da

IEP (calculated)

8.191

GRAVY (calculated)

-0.458

Length

772 amino acids

Sequence
(BLAST)

001: MQQGDQSVLS LRPGGGRGNR IFGSSSSSSS ISFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETAQLSDEI LKVKRETELE
101: LFGEEQTWAR GETVVSNVAP VQSASRFSEP DTRNWRSRLP AQPPPSGEER SWENLREARD SRYVEANQYN RQGQPRGQTS SNQGGGPAPV LVKAEVAWSA
201: RRGNLSENER VLKTVKGILN KLTPEKYDLL KGQLIDAGIT SADILTGVIN LIFDKAVLEP TFCPMYAELC SDINDKLPTF PPEKPGGKEI TFKRVLLNIC
301: QEAFEGASNL REELKQMSAP DQEAERSDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KACPAEENVE AICHFFKTIG KQLDGSMKSK
401: RINDAYFKRL QDLSKNPQLE LRLRFMVQNI IDLRSDGWVP RREEMKAKTI TEIHSDAEKN MGLRPGATAN MRKGMASSSG PLSHGPIYPG GRPGAGGLMP
501: GMPGTRRMPG APVGDNDNWE VPRTRSMSRR DGPGGSLHSP AMGKSTSMNT RLLPQGSSGF MSGKTSALLQ GSSSRPAEQP VQRAAPVAVP VPVEKPQASA
601: APKLSEEVLK SKTKSLLEEY FDLRLLDEAM QCLVDLASPS YHAEFVNEAI TLALERNPPV VEPIASLLVY LLSKKVVTPK DLETGCLMFG AMLDDVGIDL
701: PKAPNNFGEI VGKLIVAGGV DFKFVKEVLG KMEDDRFQKA VVDAAVRIVE SSEQGKSLLA SQAADVEACR NL

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.